UHGV-1417384

Genome information

Genome length 43,217 bps

CDS count 66

Completeness 72.01% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-1417384
vOTU ID	vOTU-034677
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0285222
BioSample	SAMEA2338710
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.24
Jumbo phage	No

Genome content
Genome length	43,217 bps
GC content	42.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.58%
Average CDS length	609.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1417384_1	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-1417384_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1417384_3	PHROG	phrog_15198	NA	unknown function
UHGV-1417384_3	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-1417384_3	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-1417384_3	Pfam	PF04448	NA	DUF551
UHGV-1417384_3	Structural annotation	NF041588	NA	NA
UHGV-1417384_4	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-1417384_5	Structural annotation	PF16467	NA	NA
UHGV-1417384_7	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-1417384_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1417384_8	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1417384_8	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-1417384_8	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1417384_8	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1417384_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1417384_8	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1417384_8	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1417384_10	Structural annotation	PF07453	NA	NA
UHGV-1417384_11	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1417384_11	UniRef90	UniRef90_A0A1Q9J7D4	Phage_rep_org_N domain-containing protein	NA
UHGV-1417384_11	eggNOG-mapper	1118057.CAGX01000006_gene420	Phage replisome organizer N-terminal domain protein	NA
UHGV-1417384_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1417384_11	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1417384_11	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1417384_12	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1417384_12	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-1417384_12	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-1417384_12	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1417384_12	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-1417384_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1417384_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1417384_13	UniRef90	UniRef90_A0A1Q6KA57	Single-stranded DNA-binding protein	NA
UHGV-1417384_13	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1417384_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1417384_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1417384_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1417384_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1417384_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1417384_14	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1417384_14	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1417384_14	UniRef90	UniRef90_A0A1Q6KA45	Lactamase_B domain-containing protein	NA
UHGV-1417384_14	eggNOG-mapper	411154.GFO_2483	Metallo-beta-lactamase superfamily	NA
UHGV-1417384_14	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1417384_14	dbAPIS	APIS058	NA	NA
UHGV-1417384_14	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1417384_14	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-1417384_17	PHROG	phrog_25456	NA	unknown function
UHGV-1417384_19	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1417384_19	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-1417384_19	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-1417384_19	Pfam	PF03837	RecT family	RecT
UHGV-1417384_19	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1417384_21	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-1417384_24	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1417384_24	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1417384_24	UniRef90	UniRef90_A0A1Q9J750	AAA_15 domain-containing protein	NA
UHGV-1417384_24	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-1417384_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1417384_24	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1417384_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1417384_25	PHROG	phrog_26861	NA	unknown function
UHGV-1417384_25	UniRef90	UniRef90_A0A3R6HE90	Single-stranded DNA-binding protein	NA
UHGV-1417384_25	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1417384_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1417384_25	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1417384_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1417384_25	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1417384_26	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1417384_26	PHROG	phrog_19890	NA	unknown function
UHGV-1417384_26	UniRef90	UniRef90_A0A3A9GZ37	SLT domain-containing protein	NA
UHGV-1417384_26	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-1417384_26	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1417384_26	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1417384_26	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-1417384_28	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-1417384_28	PHROG	phrog_37855	NA	unknown function
UHGV-1417384_28	UniRef90	UniRef90_A0A1Q6KA48	Spo0A_C domain-containing protein	NA
UHGV-1417384_28	eggNOG-mapper	1163671.JAGI01000003_gene798	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-1417384_28	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1417384_28	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-1417384_28	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1417384_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1417384_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1417384_29	UniRef90	UniRef90_R6V613	Phage antirepressor protein	NA
UHGV-1417384_29	eggNOG-mapper	1582156.A0A0A8WIG2_9CAUD	DNA binding	NA
UHGV-1417384_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1417384_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1417384_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1417384_30	UniRef90	UniRef90_UPI0015934173	helix-turn-helix domain-containing protein	NA
UHGV-1417384_30	eggNOG-mapper	585394.RHOM_13510	sequence-specific DNA binding	NA
UHGV-1417384_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1417384_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1417384_30	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-1417384_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1417384_31	UniRef90	UniRef90_A0A1Q9J746	HTH cro/C1-type domain-containing protein	NA
UHGV-1417384_31	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-1417384_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1417384_31	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1417384_31	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1417384_33	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1417384_33	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1417384_33	UniRef90	UniRef90_R7QUM8	DNA-binding helix-turn-helix protein	NA
UHGV-1417384_33	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-1417384_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1417384_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1417384_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1417384_34	PHROG	phrog_14030	NA	unknown function
UHGV-1417384_34	UniRef90	UniRef90_UPI00164AB959	peptidoglycan-binding protein	NA
UHGV-1417384_34	eggNOG-mapper	1095750.HMPREF9970_0318	Putative cell wall binding repeat	NA
UHGV-1417384_34	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1417384_35	PHROG	phrog_443	holin	lysis
UHGV-1417384_35	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-1417384_35	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-1417384_35	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1417384_35	Structural annotation	PF16945	NA	NA
UHGV-1417384_36	PHROG	phrog_937	hemolysin	other
UHGV-1417384_37	UniRef90	UniRef90_A0A011UAK9	Antitoxin	NA
UHGV-1417384_38	Structural annotation	PF10618, MF_01370	NA	NA
UHGV-1417384_39	Structural annotation	PF02839	NA	NA
UHGV-1417384_40	PHROG	phrog_17196	kinase	other
UHGV-1417384_40	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-1417384_40	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-1417384_41	PHROG	phrog_18444	NA	unknown function
UHGV-1417384_42	PHROG	phrog_18190	NA	unknown function
UHGV-1417384_42	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-1417384_42	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-1417384_42	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1417384_43	PHROG	phrog_1194	NA	unknown function
UHGV-1417384_43	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-1417384_43	Pfam	PF20458	NA	DUF6711
UHGV-1417384_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1417384_44	PHROG	phrog_8130	NA	unknown function
UHGV-1417384_44	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-1417384_46	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1417384_46	UniRef90	UniRef90_A0A6N2TXK2	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1417384_46	eggNOG-mapper	397290.C810_01445	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1417384_46	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1417384_46	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1417384_46	COG	COG3617	Prophage antirepressor	NA
UHGV-1417384_46	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1417384_47	UniRef90	UniRef90_A0A3A8W1P2	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-1417384_47	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-1417384_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1417384_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1417384_48	UniRef90	UniRef90_A0A3A8W290	XRE family transcriptional regulator	NA
UHGV-1417384_48	eggNOG-mapper	697303.Thewi_2448	Helix-turn-helix XRE-family like proteins	NA
UHGV-1417384_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1417384_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1417384_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1417384_48	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1417384_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1417384_50	UniRef90	UniRef90_R9KPG7	SLT domain-containing protein	NA
UHGV-1417384_50	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-1417384_50	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1417384_53	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-1417384_53	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1417384_54	Structural annotation	PF05657	NA	NA
UHGV-1417384_55	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1417384_55	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-1417384_55	eggNOG-mapper	1159488.SEQMU2_01825	NA	NA
UHGV-1417384_56	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-1417384_56	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-1417384_56	AcrCatalog	cluster_24841	NA	NA
UHGV-1417384_56	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1417384_57	PHROG	phrog_1233	NA	unknown function
UHGV-1417384_57	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1417384_57	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-1417384_58	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1417384_58	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1417384_59	UniRef90	UniRef90_UPI001CCD2AB3	TTC39/IML2 family protein	NA
UHGV-1417384_59	eggNOG-mapper	317025.Tcr_1419	NA	NA
UHGV-1417384_60	PHROG	phrog_1048	NA	unknown function
UHGV-1417384_60	UniRef90	UniRef90_UPI00189A7662	NA	NA
UHGV-1417384_60	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-1417384_60	Pfam	PF11195	NA	DUF2829
UHGV-1417384_60	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1417384_60	Structural annotation	PF11195	NA	NA
UHGV-1417384_62	UniRef90	UniRef90_UPI000836E88E	phage head-tail connector protein	NA
UHGV-1417384_62	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1417384_62	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1417384_64	PHROG	phrog_422	major head protein	head and packaging
UHGV-1417384_64	UniRef90	UniRef90_A0A3A8VYT5	N4-gp56 family major capsid protein	NA
UHGV-1417384_64	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-1417384_64	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1417384_65	Structural annotation	PF14265	NA	NA
UHGV-1417384_66	eggNOG-mapper	476272.RUMHYD_01943	Phage portal protein, SPP1 Gp6-like	NA