UHGV-1418131

Genome information

Genome length 14,573 bps

CDS count 19

Completeness 99.90% (high-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-1418131
vOTU ID	vOTU-061578
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0086738
BioSample	SAMN02333972
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.25
Jumbo phage	No

Genome content
Genome length	14,573 bps
GC content	42.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	93.82%
Average CDS length	726.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1418131_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-1418131_4	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-1418131_4	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1418131_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1418131_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1418131_5	PHROG	phrog_11037	NA	unknown function
UHGV-1418131_5	UniRef90	UniRef90_A0A843HID1	Phage_lysozyme2 domain-containing protein	NA
UHGV-1418131_5	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-1418131_5	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1418131_5	Structural annotation	PF18013, PF00877, NF006360, COG3942	NA	NA
UHGV-1418131_6	Structural annotation	PF20934	NA	NA
UHGV-1418131_7	UniRef90	UniRef90_A0A843HBI5	Ig-like domain-containing protein	NA
UHGV-1418131_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1418131_9	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-1418131_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-1418131_12	UniRef90	UniRef90_A0A843HL40	Phage DNA encapsidation protein	NA
UHGV-1418131_12	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1418131_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1418131_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1418131_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1418131_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1418131_13	UniRef90	UniRef90_A0A843HG57	DNA-directed DNA polymerase	NA
UHGV-1418131_13	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1418131_13	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1418131_13	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA