UHGV-1418396

Genome information

Genome length 22,832 bps

CDS count 34

Completeness 57.87% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1418396
vOTU ID	vOTU-025107
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0167439
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.49
Jumbo phage	No

Genome content
Genome length	22,832 bps
GC content	52.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	88.09%
Average CDS length	593.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1418396_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1418396_1	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1418396_1	UniRef90	UniRef90_R9JJE2	PBSX family phage terminase, large subunit	NA
UHGV-1418396_1	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-1418396_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1418396_1	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1418396_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-1418396_1	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1418396_2	PHROG	phrog_15404	NA	unknown function
UHGV-1418396_2	eggNOG-mapper	397291.C804_01613	NA	NA
UHGV-1418396_7	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1418396_7	UniRef90	UniRef90_A0A4U7JDN1	Phage tail tape measure protein	NA
UHGV-1418396_7	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-1418396_7	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-1418396_7	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1418396_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1418396_8	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-1418396_8	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-1418396_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1418396_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1418396_9	PHROG	phrog_13890	NA	unknown function
UHGV-1418396_9	UniRef90	UniRef90_G9YP46	Arc-like DNA-binding protein	NA
UHGV-1418396_9	eggNOG-mapper	1519439.JPJG01000054_gene2127	NA	NA
UHGV-1418396_10	PHROG	phrog_19778	NA	unknown function
UHGV-1418396_10	UniRef90	UniRef90_A0A1G9MNG4	Organiser of macrodomain of Terminus of chromosome	NA
UHGV-1418396_10	eggNOG-mapper	563038.HMPREF0851_00256	NA	NA
UHGV-1418396_10	Structural annotation	PF04480, PF05265, NF007294, COG3727	NA	NA
UHGV-1418396_11	UniRef90	UniRef90_A0A415XKB0	XRE family transcriptional regulator	NA
UHGV-1418396_11	eggNOG-mapper	767817.Desgi_2502	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1418396_11	Pfam	PF00165	Bacterial regulatory helix-turn-helix proteins, AraC family	HTH_AraC
UHGV-1418396_11	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-1418396_12	PHROG	phrog_6244	NA	unknown function
UHGV-1418396_12	eggNOG-mapper	1378168.N510_00538	NA	NA
UHGV-1418396_15	PHROG	phrog_885	major tail protein	tail
UHGV-1418396_15	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1418396_15	Structural annotation	PF06488	NA	NA
UHGV-1418396_17	PHROG	phrog_7115	NA	unknown function
UHGV-1418396_17	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-1418396_17	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-1418396_17	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1418396_17	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-1418396_18	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-1418396_18	eggNOG-mapper	1504822.CCNO01000012_gene489	phage tail tape measure protein	NA
UHGV-1418396_18	COG	COG5412	Phage-related protein	NA
UHGV-1418396_18	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-1418396_19	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-1418396_19	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-1418396_19	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1418396_20	PHROG	phrog_3558	tail protein	tail
UHGV-1418396_20	UniRef90	UniRef90_A0A847D2L1	Prophage_tail domain-containing protein	NA
UHGV-1418396_20	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-1418396_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1418396_20	COG	COG4926	Phage-related protein	NA
UHGV-1418396_20	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-1418396_21	PHROG	phrog_372	tail protein	tail
UHGV-1418396_21	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-1418396_21	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1418396_21	Pfam	PF05895	NA	DUF859
UHGV-1418396_21	COG	COG4675	Phage tail collar domain	NA
UHGV-1418396_21	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1418396_22	PHROG	phrog_1863	NA	unknown function
UHGV-1418396_22	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1418396_23	PHROG	phrog_15594	NA	unknown function
UHGV-1418396_23	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1418396_23	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1418396_24	PHROG	phrog_35892	NA	unknown function
UHGV-1418396_24	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1418396_25	PHROG	phrog_1129	holin	lysis
UHGV-1418396_25	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-1418396_25	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1418396_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1418396_25	Structural annotation	PF06946	NA	NA
UHGV-1418396_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1418396_26	PHROG	phrog_670	endolysin	lysis
UHGV-1418396_26	UniRef90	UniRef90_A0A252F607	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1418396_26	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-1418396_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1418396_26	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1418396_26	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1418396_26	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1418396_28	PHROG	phrog_3754	NA	unknown function
UHGV-1418396_28	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1418396_29	PHROG	phrog_21718	NA	unknown function
UHGV-1418396_29	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1418396_30	PHROG	phrog_22984	NA	unknown function
UHGV-1418396_31	PHROG	phrog_16490	NA	unknown function
UHGV-1418396_31	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1418396_32	PHROG	phrog_20016	NA	unknown function
UHGV-1418396_32	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1418396_32	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1418396_32	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1418396_33	PHROG	phrog_28802	NA	unknown function
UHGV-1418396_33	eggNOG-mapper	1235790.C805_00063	NA	NA
UHGV-1418396_34	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA