UHGV-1418649

Genome information

Genome length 35,109 bps

CDS count 51

Completeness 89.24% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-1418649
vOTU ID	vOTU-034697
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239217
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.73
Jumbo phage	No

Genome content
Genome length	35,109 bps
GC content	37.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.78%
Average CDS length	627.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1418649_2	PHROG	phrog_953	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1418649_2	UniRef90	UniRef90_A0A377G2V1	AP2 domain	NA
UHGV-1418649_2	eggNOG-mapper	1129192.A0A0E3D9I3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1418649_3	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-1418649_3	UniRef90	UniRef90_A0A0A0HZ58	DNA-binding protein	NA
UHGV-1418649_3	eggNOG-mapper	1511.CLOST_0069	NA	NA
UHGV-1418649_3	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-1418649_4	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1418649_4	UniRef90	UniRef90_A0A1H9YKF3	NA	NA
UHGV-1418649_4	eggNOG-mapper	1449050.JNLE01000003_gene3910	NA	NA
UHGV-1418649_4	Pfam	PF06048	NA	DUF927
UHGV-1418649_4	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1418649_4	COG	COG5519	NA	NA
UHGV-1418649_4	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1418649_5	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1418649_5	PHROG	phrog_11992	NA	unknown function
UHGV-1418649_5	UniRef90	UniRef90_A0A2S6HSL8	CHC2-type zinc finger protein	NA
UHGV-1418649_5	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-1418649_5	PADLOC	drt-UG29	DRT	DRT
UHGV-1418649_5	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1418649_5	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1418649_5	Structural annotation	PF01807	NA	NA
UHGV-1418649_6	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1418649_6	UniRef90	UniRef90_A0A3E2U732	ERCC4 domain-containing protein	NA
UHGV-1418649_6	eggNOG-mapper	1298920.KI911353_gene4868	NA	NA
UHGV-1418649_6	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1418649_6	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1418649_7	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1418649_7	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-1418649_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1418649_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1418649_8	UniRef90	UniRef90_A0A374PBD4	Single-stranded DNA-binding protein	NA
UHGV-1418649_8	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-1418649_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1418649_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1418649_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1418649_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1418649_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1418649_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1418649_9	UniRef90	UniRef90_A0A7U9PED5	ERF superfamily protein	NA
UHGV-1418649_9	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-1418649_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-1418649_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1418649_9	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1418649_10	PHROG	phrog_674	NA	unknown function
UHGV-1418649_10	UniRef90	UniRef90_UPI00049578E0	NA	NA
UHGV-1418649_10	eggNOG-mapper	357809.Cphy_2989	NA	NA
UHGV-1418649_10	Pfam	PF07083	NA	DUF1351
UHGV-1418649_13	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1418649_13	eggNOG-mapper	1274524.BSONL12_05988	Helix-turn-helix XRE-family like proteins	NA
UHGV-1418649_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1418649_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1418649_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1418649_14	UniRef90	UniRef90_A0A0J1IMQ2	XRE family transcriptional regulator	NA
UHGV-1418649_14	eggNOG-mapper	546273.VEIDISOL_00692	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1418649_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1418649_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1418649_14	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1418649_15	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1418649_15	UniRef90	UniRef90_A0A7U9RAY7	HTH cro/C1-type domain-containing protein	NA
UHGV-1418649_15	eggNOG-mapper	525318.HMPREF0497_1708	transcriptional regulators	NA
UHGV-1418649_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1418649_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1418649_15	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1418649_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1418649_16	PHROG	phrog_1	integrase	integration and excision
UHGV-1418649_16	UniRef90	UniRef90_A0A7C6WMS3	Tyrosine-type recombinase/integrase	NA
UHGV-1418649_16	eggNOG-mapper	748449.Halha_0416	Phage integrase SAM-like domain	NA
UHGV-1418649_16	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1418649_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1418649_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1418649_16	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1418649_17	PHROG	phrog_5156	NA	unknown function
UHGV-1418649_17	UniRef90	UniRef90_A0A1S8Q8D3	AAA-like domain protein	NA
UHGV-1418649_17	eggNOG-mapper	1443125.Z962_p0079	COG0433 Predicted ATPase	NA
UHGV-1418649_17	Pfam	PF10412	Type IV secretion-system coupling protein DNA-binding domain	TrwB_AAD_bind
UHGV-1418649_17	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-1418649_17	Structural annotation	PF02534, NF041017, COG3451	NA	NA
UHGV-1418649_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1418649_22	PHROG	phrog_5182	endolysin	lysis
UHGV-1418649_22	UniRef90	UniRef90_A0A098F7Y1	Autolysin	NA
UHGV-1418649_22	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-1418649_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1418649_22	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1418649_22	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1418649_22	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1418649_23	PHROG	phrog_443	holin	lysis
UHGV-1418649_23	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-1418649_23	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-1418649_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1418649_23	Structural annotation	PF16945	NA	NA
UHGV-1418649_25	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-1418649_25	COG	COG4926	Phage-related protein	NA
UHGV-1418649_26	PHROG	phrog_1194	NA	unknown function
UHGV-1418649_26	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-1418649_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1418649_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1418649_27	eggNOG-mapper	1151292.QEW_2423	phage tail tape measure protein	NA
UHGV-1418649_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1418649_28	PHROG	phrog_8355	NA	unknown function
UHGV-1418649_28	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-1418649_28	eggNOG-mapper	717606.PaecuDRAFT_3131	Bacteriophage Gp15 protein	NA
UHGV-1418649_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1418649_28	Structural annotation	PF06854	NA	NA
UHGV-1418649_29	PHROG	phrog_8300	NA	unknown function
UHGV-1418649_29	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-1418649_29	Structural annotation	PF06896	NA	NA
UHGV-1418649_30	PHROG	phrog_820	major tail protein	tail
UHGV-1418649_30	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-1418649_30	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-1418649_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1418649_31	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1418649_31	UniRef90	UniRef90_UPI0006D53DB3	minor capsid protein	NA
UHGV-1418649_31	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-1418649_31	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1418649_31	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1418649_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1418649_32	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1418649_33	PHROG	phrog_8710	NA	unknown function
UHGV-1418649_33	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-1418649_33	eggNOG-mapper	1117108.PAALTS15_13547	NA	NA
UHGV-1418649_33	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1418649_34	eggNOG-mapper	1294142.CINTURNW_1031	NA	NA
UHGV-1418649_35	PHROG	phrog_212	major head protein	head and packaging
UHGV-1418649_35	UniRef90	UniRef90_UPI001B36AC1A	phage capsid protein	NA
UHGV-1418649_35	eggNOG-mapper	1294142.CINTURNW_1029	NA	NA
UHGV-1418649_35	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1418649_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1418649_36	UniRef90	UniRef90_A0A7X0RYC9	Phage scaffolding protein	NA
UHGV-1418649_36	eggNOG-mapper	1262449.CP6013_3198	Phage minor structural protein GP20	NA
UHGV-1418649_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1418649_36	Structural annotation	PF06810	NA	NA
UHGV-1418649_37	PHROG	phrog_1382	NA	unknown function
UHGV-1418649_37	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-1418649_37	Structural annotation	NF040910	NA	NA
UHGV-1418649_39	PHROG	phrog_19695	NA	unknown function
UHGV-1418649_39	eggNOG-mapper	476272.RUMHYD_01788	NA	NA
UHGV-1418649_41	COG	COG2733	NA	NA
UHGV-1418649_42	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1418649_42	UniRef90	UniRef90_UPI0013E35C2F	NUMOD4 domain-containing protein	NA
UHGV-1418649_42	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-1418649_42	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1418649_42	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1418649_42	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1418649_42	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1418649_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1418649_43	UniRef90	UniRef90_A0A7C6P2F6	Capsid protein	NA
UHGV-1418649_43	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-1418649_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1418649_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-1418649_44	UniRef90	UniRef90_A0A7C6P413	Capsid protein	NA
UHGV-1418649_44	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-1418649_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1418649_45	PHROG	phrog_25433	NA	unknown function
UHGV-1418649_45	eggNOG-mapper	358220.C380_09940	NA	NA
UHGV-1418649_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1418649_46	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1418649_46	UniRef90	UniRef90_UPI0015B49425	terminase	NA
UHGV-1418649_46	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-1418649_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-1418649_46	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1418649_47	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1418649_47	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1418649_47	UniRef90	UniRef90_A0A7X0VJC6	Terminase small subunit	NA
UHGV-1418649_47	eggNOG-mapper	1408823.AXUS01000024_gene2711	terminase, small subunit	NA
UHGV-1418649_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1418649_47	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1418649_47	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1418649_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1418649_48	UniRef90	UniRef90_UPI001CD68077	NA	NA
UHGV-1418649_48	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-1418649_48	Pfam	PF07374	NA	DUF1492
UHGV-1418649_48	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1418649_49	PHROG	phrog_6568	NA	unknown function
UHGV-1418649_49	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA