UHGV-1418712

Genome information

Genome length 21,872 bps

CDS count 27

Completeness 54.90% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1418712
vOTU ID	vOTU-027961
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0160411
BioSample	SAMN06112012
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.38
Jumbo phage	No

Genome content
Genome length	21,872 bps
GC content	43.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	97.51%
Average CDS length	795.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1418712_1	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1418712_1	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-1418712_3	UniRef90	UniRef90_UPI001D0A6980	fibronectin type III domain-containing protein	NA
UHGV-1418712_3	eggNOG-mapper	28444.JODQ01000003_gene5077	Glycosyl hydrolase family 10	NA
UHGV-1418712_3	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1418712_3	COG	COG3693	Endo-1,4-beta-xylanase, GH35 family	NA
UHGV-1418712_3	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-1418712_4	PHROG	phrog_9534	head protein	head and packaging
UHGV-1418712_4	UniRef90	UniRef90_UPI0011598740	structural protein	NA
UHGV-1418712_4	eggNOG-mapper	1234664.AMRO01000024_gene1819	NA	NA
UHGV-1418712_4	Structural annotation	PF20747	NA	NA
UHGV-1418712_5	PHROG	phrog_538	minor tail protein	tail
UHGV-1418712_5	UniRef90	UniRef90_UPI001D0B76DC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1418712_5	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1418712_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1418712_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1418712_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1418712_6	UniRef90	UniRef90_UPI001D0AA3C9	phage tail family protein	NA
UHGV-1418712_6	eggNOG-mapper	428127.EUBDOL_01213	phage tail	NA
UHGV-1418712_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-1418712_6	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1418712_7	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-1418712_7	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-1418712_7	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-1418712_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1418712_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1418712_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1418712_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1418712_8	PHROG	phrog_706	NA	unknown function
UHGV-1418712_8	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-1418712_8	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-1418712_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1418712_8	Structural annotation	PF06854	NA	NA
UHGV-1418712_9	Structural annotation	PF10666	NA	NA
UHGV-1418712_10	PHROG	phrog_3099	NA	unknown function
UHGV-1418712_10	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-1418712_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1418712_11	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-1418712_11	Structural annotation	PF16807	NA	NA
UHGV-1418712_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1418712_12	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-1418712_12	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-1418712_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1418712_12	Structural annotation	PF11114	NA	NA
UHGV-1418712_13	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-1418712_13	Structural annotation	PF20536	NA	NA
UHGV-1418712_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-1418712_15	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-1418712_15	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-1418712_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1418712_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1418712_16	UniRef90	UniRef90_UPI001897D024	phage scaffolding protein	NA
UHGV-1418712_16	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-1418712_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1418712_16	Structural annotation	PF06810	NA	NA
UHGV-1418712_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1418712_18	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-1418712_18	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-1418712_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1418712_18	COG	COG2369	NA	NA
UHGV-1418712_18	Structural annotation	PF06152	NA	NA
UHGV-1418712_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-1418712_19	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-1418712_19	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-1418712_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1418712_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1418712_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1418712_20	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-1418712_20	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-1418712_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1418712_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1418712_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1418712_21	PHROG	phrog_2412	NA	unknown function
UHGV-1418712_21	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-1418712_21	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-1418712_22	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1418712_22	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1418712_22	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-1418712_22	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-1418712_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1418712_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1418712_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1418712_22	COG	COG0863	DNA modification methylase	NA
UHGV-1418712_22	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1418712_23	Structural annotation	TIGR01637	NA	NA
UHGV-1418712_24	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1418712_24	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1418712_24	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-1418712_24	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-1418712_24	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1418712_24	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1418712_24	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1418712_24	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1418712_24	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1418712_25	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1418712_25	UniRef90	UniRef90_UPI00189BA373	VRR-NUC domain-containing protein	NA
UHGV-1418712_25	eggNOG-mapper	1122146.AUHP01000010_gene1025	VRR_NUC	NA
UHGV-1418712_25	Structural annotation	PF01870, MF_00130, NF040854, COG1591	NA	NA
UHGV-1418712_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1418712_27	UniRef90	UniRef90_A0A3C1N3G5	MazG domain-containing protein	NA
UHGV-1418712_27	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-1418712_27	Structural annotation	PF02185	NA	NA