UHGV-1418788

Genome information

Genome length 35,948 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9649

Prediction confidence Confident

Genome information
Genome ID	UHGV-1418788
vOTU ID	vOTU-012971
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0245015
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9649
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.48
Jumbo phage	No

Genome content
Genome length	35,948 bps
GC content	47.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.36%
Average CDS length	734.11 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1418788_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1418788_2	PHROG	phrog_670	endolysin	lysis
UHGV-1418788_2	UniRef90	UniRef90_R7KX59	Muramidase (Flagellum-specific)	NA
UHGV-1418788_2	eggNOG-mapper	1298920.KI911353_gene2668	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1418788_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1418788_2	Pfam	PF05036	SPOR domain	SPOR
UHGV-1418788_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1418788_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1418788_3	PHROG	phrog_199	holin	lysis
UHGV-1418788_3	UniRef90	UniRef90_A0A351TJT2	Holin	NA
UHGV-1418788_3	eggNOG-mapper	471875.RUMLAC_02256	toxin secretion phage lysis holin	NA
UHGV-1418788_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1418788_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1418788_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1418788_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1418788_6	Structural annotation	PF21621	NA	NA
UHGV-1418788_8	Structural annotation	PF05954, NF033848, COG4379	NA	NA
UHGV-1418788_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1418788_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1418788_10	UniRef90	UniRef90_A0A1C6GH83	Phage-related minor tail protein	NA
UHGV-1418788_10	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-1418788_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1418788_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1418788_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1418788_10	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1418788_11	PHROG	phrog_706	NA	unknown function
UHGV-1418788_11	UniRef90	UniRef90_A0A1C6GGT7	Bacteriophage Gp15 protein	NA
UHGV-1418788_11	eggNOG-mapper	1300150.EMQU_2490	Bacteriophage Gp15 protein	NA
UHGV-1418788_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1418788_11	Structural annotation	PF06854	NA	NA
UHGV-1418788_13	PHROG	phrog_3099	NA	unknown function
UHGV-1418788_13	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-1418788_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1418788_14	PHROG	phrog_3266	tail completion	connector
UHGV-1418788_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1418788_15	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-1418788_15	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-1418788_15	Structural annotation	PF11114	NA	NA
UHGV-1418788_16	Pfam	PF20536	NA	DUF6751
UHGV-1418788_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1418788_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1418788_17	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1418788_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-1418788_18	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-1418788_18	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-1418788_18	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1418788_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1418788_19	UniRef90	UniRef90_A0A1C6GGD5	Phage minor structural protein GP20	NA
UHGV-1418788_19	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-1418788_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1418788_19	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1418788_20	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA
UHGV-1418788_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1418788_21	UniRef90	UniRef90_A0A1C6GGW2	Phage minor capsid protein 2	NA
UHGV-1418788_21	eggNOG-mapper	1151292.QEW_4539	NA	NA
UHGV-1418788_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1418788_21	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1418788_21	COG	COG2369	NA	NA
UHGV-1418788_21	Structural annotation	PF06152, PF15542	NA	NA
UHGV-1418788_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1418788_22	UniRef90	UniRef90_A0A1C6GG74	Phage portal protein, putative, A118 family	NA
UHGV-1418788_22	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-1418788_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1418788_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1418788_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1418788_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1418788_23	UniRef90	UniRef90_A0A1C6GFY7	Phage terminase, large subunit, PBSX family	NA
UHGV-1418788_23	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-1418788_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1418788_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1418788_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1418788_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1418788_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1418788_24	Structural annotation	PF15968	NA	NA
UHGV-1418788_25	eggNOG-mapper	41431.PCC8801_3064	NA	NA
UHGV-1418788_26	Structural annotation	TIGR01636	NA	NA
UHGV-1418788_28	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1418788_28	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1418788_28	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-1418788_28	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-1418788_28	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1418788_28	Pfam	PF19263	NA	DUF5906
UHGV-1418788_28	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1418788_28	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1418788_28	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1418788_28	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-1418788_29	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1418788_29	UniRef90	UniRef90_UPI0006852132	NA	NA
UHGV-1418788_29	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-1418788_29	Pfam	PF05037	NA	DUF669
UHGV-1418788_29	Structural annotation	PF05037, NF004948	NA	NA
UHGV-1418788_30	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1418788_30	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-1418788_30	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-1418788_30	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1418788_30	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-1418788_31	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1418788_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1418788_31	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-1418788_31	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-1418788_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1418788_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1418788_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1418788_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1418788_31	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1418788_32	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1418788_32	UniRef90	UniRef90_A0A843H8D6	ATP-binding protein	NA
UHGV-1418788_32	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-1418788_33	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1418788_33	UniRef90	UniRef90_R6R2R3	Siphovirus Gp157	NA
UHGV-1418788_33	eggNOG-mapper	420246.GTNG_2855	Siphovirus Gp157	NA
UHGV-1418788_33	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1418788_33	Structural annotation	PF05565	NA	NA
UHGV-1418788_34	PHROG	phrog_1733	NA	unknown function
UHGV-1418788_34	eggNOG-mapper	398512.JQKC01000009_gene428	DNA binding	NA
UHGV-1418788_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1418788_36	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1418788_36	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1418788_43	UniRef90	UniRef90_A0A3A9FK22	Transcriptional regulator	NA
UHGV-1418788_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1418788_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1418788_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1418788_44	UniRef90	UniRef90_A0A3A9FL87	Helix-turn-helix domain-containing protein	NA
UHGV-1418788_44	eggNOG-mapper	887929.HMP0721_0588	Cytoplasmic, score 8.87	NA
UHGV-1418788_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1418788_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1418788_44	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1418788_44	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1418788_45	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1418788_45	UniRef90	UniRef90_A0A1C6GF39	Host cell surface-exposed lipoprotein	NA
UHGV-1418788_45	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-1418788_45	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1418788_45	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1418788_46	UniRef90	UniRef90_R6SEH3	TPR Domain containing protein	NA
UHGV-1418788_46	Structural annotation	PF18768, MF_00994, NF008756, COG5010	NA	NA
UHGV-1418788_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1418788_47	PHROG	phrog_95	integrase	integration and excision
UHGV-1418788_47	UniRef90	UniRef90_A0A1C6GEY5	Resolvase, N terminal domain	NA
UHGV-1418788_47	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-1418788_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1418788_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-1418788_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1418788_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1418788_47	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA