UHGV-1418802

Genome information

Genome length 23,203 bps

CDS count 32

Completeness 52.66% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1418802
vOTU ID	vOTU-024512
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0170024
BioSample	SAMEA2338822
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.61
Jumbo phage	No

Genome content
Genome length	23,203 bps
GC content	44.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.65%
Average CDS length	680.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1418802_2	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1418802_2	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1418802_4	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-1418802_4	UniRef90	UniRef90_UPI00164A2069	phage tail protein	NA
UHGV-1418802_4	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-1418802_4	COG	COG4675	Phage tail collar domain	NA
UHGV-1418802_5	PHROG	phrog_17196	kinase	other
UHGV-1418802_5	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-1418802_5	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-1418802_6	PHROG	phrog_18444	NA	unknown function
UHGV-1418802_7	PHROG	phrog_18190	NA	unknown function
UHGV-1418802_7	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-1418802_7	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-1418802_7	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1418802_8	PHROG	phrog_1194	NA	unknown function
UHGV-1418802_8	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-1418802_8	Pfam	PF20458	NA	DUF6711
UHGV-1418802_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1418802_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1418802_9	UniRef90	UniRef90_A0A1C6CG40	Phage-related protein	NA
UHGV-1418802_9	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-1418802_9	COG	COG5283	Phage-related tail protein	NA
UHGV-1418802_10	PHROG	phrog_706	NA	unknown function
UHGV-1418802_10	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-1418802_10	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-1418802_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1418802_10	Structural annotation	PF06854	NA	NA
UHGV-1418802_11	PHROG	phrog_11299	NA	unknown function
UHGV-1418802_11	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-1418802_11	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-1418802_11	Structural annotation	PF10666	NA	NA
UHGV-1418802_12	PHROG	phrog_3099	NA	unknown function
UHGV-1418802_12	eggNOG-mapper	931276.Cspa_c07510	NA	NA
UHGV-1418802_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1418802_13	PHROG	phrog_3266	tail completion	connector
UHGV-1418802_13	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-1418802_13	Structural annotation	PF12691	NA	NA
UHGV-1418802_14	PHROG	phrog_3366	NA	unknown function
UHGV-1418802_14	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1418802_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1418802_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1418802_15	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-1418802_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-1418802_16	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-1418802_16	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-1418802_16	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1418802_16	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1418802_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1418802_17	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-1418802_18	PHROG	phrog_1865	NA	unknown function
UHGV-1418802_18	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-1418802_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1418802_19	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-1418802_19	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-1418802_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1418802_19	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1418802_19	COG	COG2369	NA	NA
UHGV-1418802_19	Structural annotation	PF06152, PF15542, TIGR01641	NA	NA
UHGV-1418802_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1418802_20	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-1418802_20	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-1418802_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1418802_20	Structural annotation	PF11114	NA	NA
UHGV-1418802_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1418802_21	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-1418802_21	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-1418802_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1418802_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1418802_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1418802_22	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-1418802_22	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1418802_22	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-1418802_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1418802_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1418802_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1418802_22	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1418802_23	PHROG	phrog_9479	NA	unknown function
UHGV-1418802_23	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-1418802_23	Structural annotation	PF15529	NA	NA
UHGV-1418802_25	PHROG	phrog_8680	NA	unknown function
UHGV-1418802_25	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-1418802_25	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1418802_25	Pfam	PF14386	NA	DUF4417
UHGV-1418802_25	Structural annotation	PF14386	NA	NA
UHGV-1418802_26	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1418802_26	PHROG	phrog_24920	NA	unknown function
UHGV-1418802_26	UniRef90	UniRef90_A0A6N3H8N1	LexA repressor	NA
UHGV-1418802_26	eggNOG-mapper	1235799.C818_03301	LexA DNA binding domain	NA
UHGV-1418802_26	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1418802_26	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1418802_26	Structural annotation	PF01726, MF_00732, NF000243, COG1321	NA	NA
UHGV-1418802_27	UniRef90	UniRef90_UPI001C0249A7	ABC transporter ATP-binding protein	NA
UHGV-1418802_28	PHROG	phrog_10867	NA	unknown function
UHGV-1418802_28	eggNOG-mapper	411459.RUMOBE_01751	NA	NA
UHGV-1418802_29	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-1418802_30	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1418802_30	UniRef90	UniRef90_UPI000E4BC394	NA	NA
UHGV-1418802_30	eggNOG-mapper	1211817.CCAT010000053_gene2117	NA	NA
UHGV-1418802_30	Pfam	PF12961	NA	DUF3850
UHGV-1418802_30	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1418802_31	PHROG	phrog_20593	NA	unknown function
UHGV-1418802_32	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1418802_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1418802_32	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-1418802_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1418802_32	Structural annotation	NF007260	NA	NA