UHGV-1419069

Genome information

Genome length 22,951 bps

CDS count 40

Completeness 58.63% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-1419069
vOTU ID	vOTU-034706
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0168240
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.12
Jumbo phage	No

Genome content
Genome length	22,951 bps
GC content	39.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	90.77%
Average CDS length	525.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419069_1	KOfam	K14059	int; integrase	NA
UHGV-1419069_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1419069_1	UniRef90	UniRef90_A0A3R9KJB3	Tyrosine recombinase XerD	NA
UHGV-1419069_1	eggNOG-mapper	1095737.HMPREF1110_1189	Pfam:Integrase_AP2	NA
UHGV-1419069_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1419069_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1419069_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1419069_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1419069_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1419069_2	PHROG	phrog_6701	NA	unknown function
UHGV-1419069_2	UniRef90	UniRef90_A0A4V6Z3U1	Orf73	NA
UHGV-1419069_3	PHROG	phrog_10787	NA	unknown function
UHGV-1419069_3	Structural annotation	PF14524, MF_00791, TIGR02186	NA	NA
UHGV-1419069_4	PHROG	phrog_1516	NA	unknown function
UHGV-1419069_4	UniRef90	UniRef90_G6C9L7	Peptidase_M78 domain-containing protein	NA
UHGV-1419069_4	eggNOG-mapper	420890.LCGL_1426	NA	NA
UHGV-1419069_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1419069_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1419069_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1419069_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1419069_5	UniRef90	UniRef90_F9LWE8	DNA-binding helix-turn-helix protein	NA
UHGV-1419069_5	eggNOG-mapper	1282664.H354_06496	Helix-turn-helix XRE-family like proteins	NA
UHGV-1419069_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1419069_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1419069_5	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1419069_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419069_7	UniRef90	UniRef90_UPI00066DA070	NA	NA
UHGV-1419069_7	eggNOG-mapper	1453503.AU05_21100	NA	NA
UHGV-1419069_7	Pfam	PF13643	NA	DUF4145
UHGV-1419069_7	Structural annotation	COG2250	NA	NA
UHGV-1419069_8	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419069_8	UniRef90	UniRef90_UPI000F665AF2	DNA-binding protein	NA
UHGV-1419069_8	eggNOG-mapper	1000588.HMPREF9965_1728	NA	NA
UHGV-1419069_8	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-1419069_9	PHROG	phrog_5866	NA	unknown function
UHGV-1419069_9	UniRef90	UniRef90_A0A428GXL2	HTH merR-type domain-containing protein	NA
UHGV-1419069_9	eggNOG-mapper	1589270.A0A0B5A536_9CAUD	NA	NA
UHGV-1419069_9	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-1419069_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1419069_11	PHROG	phrog_7964	NA	unknown function
UHGV-1419069_11	UniRef90	UniRef90_UPI0015837CF7	polymer-forming cytoskeletal protein	NA
UHGV-1419069_11	eggNOG-mapper	1239381.K4JTL7_9CAUD	NA	NA
UHGV-1419069_14	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-1419069_14	UniRef90	UniRef90_A0A139NBC1	Putative phage protein	NA
UHGV-1419069_14	Structural annotation	PF21715, MF_00732, TIGR04176, COG1510	NA	NA
UHGV-1419069_15	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1419069_15	UniRef90	UniRef90_A0A0T5PNV5	Phage-like protein	NA
UHGV-1419069_15	eggNOG-mapper	1461246.X2KU06_9VIRU	NA	NA
UHGV-1419069_15	Structural annotation	NF010673	NA	NA
UHGV-1419069_16	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419069_16	UniRef90	UniRef90_A0A428GXX7	HNHc domain-containing protein	NA
UHGV-1419069_16	eggNOG-mapper	1282664.H354_06526	HNH endonuclease	NA
UHGV-1419069_16	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1419069_16	Structural annotation	PF13392	NA	NA
UHGV-1419069_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1419069_17	UniRef90	UniRef90_A0A0Z8GHM4	NA	NA
UHGV-1419069_17	eggNOG-mapper	1321372.AQQB01000060_gene45	Siphovirus Gp157	NA
UHGV-1419069_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1419069_17	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1419069_18	PHROG	phrog_1341	NA	unknown function
UHGV-1419069_18	UniRef90	UniRef90_A0A139QHN5	NA	NA
UHGV-1419069_19	PHROG	phrog_1981	NA	unknown function
UHGV-1419069_19	UniRef90	UniRef90_A0A0U0KQN9	NA	NA
UHGV-1419069_19	Structural annotation	PF02075, MF_00034, NF000711, COG0816	NA	NA
UHGV-1419069_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1419069_20	UniRef90	UniRef90_A0A2I1YZ54	ResIII domain-containing protein	NA
UHGV-1419069_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1419069_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1419069_20	Structural annotation	PF04851, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-1419069_21	PHROG	phrog_2486	NA	unknown function
UHGV-1419069_21	UniRef90	UniRef90_A0A139QHN0	NA	NA
UHGV-1419069_22	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1419069_22	UniRef90	UniRef90_A0A8E8DDE3	ERF family protein	NA
UHGV-1419069_22	eggNOG-mapper	1282664.H354_06556	ERF superfamily	NA
UHGV-1419069_22	Pfam	PF04404	ERF superfamily	ERF
UHGV-1419069_22	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1419069_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1419069_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419069_23	UniRef90	UniRef90_A0A3R9LFK5	Single-stranded DNA-binding protein	NA
UHGV-1419069_23	eggNOG-mapper	1282664.H354_06566	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1419069_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1419069_23	NCBIFam	NF005580.0	single-stranded DNA-binding protein	NA
UHGV-1419069_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1419069_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1419069_23	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1419069_24	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1419069_24	UniRef90	UniRef90_UPI000DD9FD64	bifunctional DNA primase/polymerase	NA
UHGV-1419069_24	eggNOG-mapper	1282664.H354_06571	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-1419069_24	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1419069_24	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1419069_24	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1419069_24	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-1419069_25	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1419069_25	UniRef90	UniRef90_A0A1X0WN29	Helicase	NA
UHGV-1419069_25	eggNOG-mapper	1282664.H354_06576	Virulence-associated protein E	NA
UHGV-1419069_25	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1419069_25	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1419069_25	Structural annotation	PF05272, MF_04000, NF011296, COG5545	NA	NA
UHGV-1419069_27	PHROG	phrog_121	NA	unknown function
UHGV-1419069_27	UniRef90	UniRef90_A0A371QFT6	NA	NA
UHGV-1419069_27	eggNOG-mapper	585203.SMSK564_1299	NA	NA
UHGV-1419069_27	Pfam	PF07852	NA	DUF1642
UHGV-1419069_27	Structural annotation	PF07852	NA	NA
UHGV-1419069_28	PHROG	phrog_7136	NA	unknown function
UHGV-1419069_29	PHROG	phrog_98	NA	unknown function
UHGV-1419069_29	UniRef90	UniRef90_A0A5B0DB40	YopX domain-containing protein	NA
UHGV-1419069_29	eggNOG-mapper	1122172.KB890259_gene1462	YopX protein	NA
UHGV-1419069_29	Pfam	PF09643	YopX protein	YopX
UHGV-1419069_29	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1419069_29	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1419069_30	PHROG	phrog_3972	NA	unknown function
UHGV-1419069_30	UniRef90	UniRef90_A0A150NN49	NA	NA
UHGV-1419069_30	eggNOG-mapper	365659.smi_0430	NA	NA
UHGV-1419069_30	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-1419069_31	PHROG	phrog_4455	NA	unknown function
UHGV-1419069_31	UniRef90	UniRef90_A0A4J2CRE4	NA	NA
UHGV-1419069_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1419069_32	UniRef90	UniRef90_A0A139QHN6	NA	NA
UHGV-1419069_32	eggNOG-mapper	1214217.ALNF01000014_gene1384	NA	NA
UHGV-1419069_32	Pfam	PF07374	NA	DUF1492
UHGV-1419069_32	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1419069_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419069_33	UniRef90	UniRef90_UPI000F65F612	HNH endonuclease	NA
UHGV-1419069_33	eggNOG-mapper	1225805.J7KBS6_9CAUD	HNH endonuclease	NA
UHGV-1419069_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1419069_34	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1419069_34	UniRef90	UniRef90_A0A3R9SWJ6	Phage terminase, small subunit	NA
UHGV-1419069_34	eggNOG-mapper	1154860.SAG0136_08060	Phage terminase, small subunit	NA
UHGV-1419069_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1419069_34	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1419069_34	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1419069_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1419069_35	PHROG	phrog_14725	NA	unknown function
UHGV-1419069_35	UniRef90	UniRef90_A0A081R6M3	NA	NA
UHGV-1419069_35	Structural annotation	PF10922	NA	NA
UHGV-1419069_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1419069_36	UniRef90	UniRef90_UPI00065FBFD1	terminase large subunit	NA
UHGV-1419069_36	eggNOG-mapper	1225805.J7KGY7_9CAUD	Phage Terminase	NA
UHGV-1419069_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1419069_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1419069_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1419069_37	PHROG	phrog_903	NA	unknown function
UHGV-1419069_38	UniRef90	UniRef90_A0A1X1FZV9	NA	NA
UHGV-1419069_38	Structural annotation	PF11611, NF003465, COG3353	NA	NA
UHGV-1419069_39	PHROG	phrog_8043	NA	unknown function
UHGV-1419069_39	UniRef90	UniRef90_A0A3R9M4D0	HIRAN domain-containing protein	NA
UHGV-1419069_39	eggNOG-mapper	391295.SSU05_0840	HIRAN domain	NA
UHGV-1419069_39	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-1419069_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-1419069_40	UniRef90	UniRef90_A0A428GXZ0	Phage portal protein	NA
UHGV-1419069_40	eggNOG-mapper	1403946.Q615_SPAC00127G0138	Phage portal protein	NA
UHGV-1419069_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1419069_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1419069_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1419069_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA