UHGV-1419140

Genome information

Genome length 34,050 bps

CDS count 46

Completeness 89.01% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1419140
vOTU ID	vOTU-034056
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0233733
BioSample	SAMEA2737975
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	37
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.44
Jumbo phage	No

Genome content
Genome length	34,050 bps
GC content	39.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.65%
Average CDS length	688.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419140_1	PHROG	phrog_199	holin	lysis
UHGV-1419140_1	UniRef90	UniRef90_A0A139N248	Phage protein (ACLAME 42)	NA
UHGV-1419140_1	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-1419140_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1419140_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1419140_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1419140_2	PHROG	phrog_2566	NA	unknown function
UHGV-1419140_2	UniRef90	UniRef90_A0A139N2Q3	Orf49	NA
UHGV-1419140_2	eggNOG-mapper	120574.Q94M32_9CAUD	NA	NA
UHGV-1419140_3	PHROG	phrog_372	tail protein	tail
UHGV-1419140_3	UniRef90	UniRef90_UPI001CBAE07F	NA	NA
UHGV-1419140_3	eggNOG-mapper	888049.HMPREF8578_0253	NA	NA
UHGV-1419140_3	Pfam	PF05895	NA	DUF859
UHGV-1419140_3	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1419140_4	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-1419140_4	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1419140_4	UniRef90	UniRef90_A0A139N1U0	Phage tail assembly	NA
UHGV-1419140_4	eggNOG-mapper	1123302.KB904167_gene529	cellulase activity	NA
UHGV-1419140_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1419140_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1419140_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1419140_4	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1419140_4	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-1419140_5	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1419140_5	UniRef90	UniRef90_A0A139N1W5	Phage capsid and scaffold	NA
UHGV-1419140_5	eggNOG-mapper	1277892.M1I9T9_9CAUD	Phage tail protein	NA
UHGV-1419140_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1419140_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1419140_5	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1419140_6	PHROG	phrog_1204	tail protein	tail
UHGV-1419140_6	UniRef90	UniRef90_UPI001CBBCE89	tape measure protein	NA
UHGV-1419140_6	eggNOG-mapper	1123302.KB904167_gene527	phage tail tape measure protein	NA
UHGV-1419140_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1419140_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1419140_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1419140_7	PHROG	phrog_706	NA	unknown function
UHGV-1419140_7	UniRef90	UniRef90_UPI0013DB20BF	Gp15 family bacteriophage protein	NA
UHGV-1419140_7	eggNOG-mapper	1277892.M1IEU4_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1419140_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1419140_7	Structural annotation	PF06854	NA	NA
UHGV-1419140_8	PHROG	phrog_1061	NA	unknown function
UHGV-1419140_8	Structural annotation	PF10666	NA	NA
UHGV-1419140_9	PHROG	phrog_820	major tail protein	tail
UHGV-1419140_9	UniRef90	UniRef90_A0A139N2J0	Phage major tail shaft protein	NA
UHGV-1419140_9	eggNOG-mapper	1123302.KB904167_gene524	NA	NA
UHGV-1419140_9	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-1419140_10	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1419140_10	UniRef90	UniRef90_A0A412PL45	Capsid protein	NA
UHGV-1419140_10	eggNOG-mapper	1123302.KB904167_gene523	Minor capsid protein from bacteriophage	NA
UHGV-1419140_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1419140_10	Structural annotation	PF12691	NA	NA
UHGV-1419140_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1419140_11	UniRef90	UniRef90_UPI000660DC25	minor capsid protein	NA
UHGV-1419140_11	eggNOG-mapper	1121871.AUAT01000035_gene1283	Minor capsid protein	NA
UHGV-1419140_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1419140_11	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1419140_12	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1419140_12	UniRef90	UniRef90_A0A4D5ZZ28	Minor capsid protein	NA
UHGV-1419140_12	eggNOG-mapper	1123302.KB904167_gene521	Minor capsid protein	NA
UHGV-1419140_12	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1419140_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1419140_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1419140_13	UniRef90	UniRef90_A0A139N2P2	NA	NA
UHGV-1419140_13	eggNOG-mapper	1123302.KB904167_gene520	NA	NA
UHGV-1419140_14	PHROG	phrog_2910	NA	unknown function
UHGV-1419140_15	PHROG	phrog_840	major head protein	head and packaging
UHGV-1419140_15	UniRef90	UniRef90_A0A139N1T0	Phage major capsid protein	NA
UHGV-1419140_15	eggNOG-mapper	1277892.M1I9U6_9CAUD	NA	NA
UHGV-1419140_15	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-1419140_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1419140_16	UniRef90	UniRef90_A0A898K9B2	Scaffolding protein	NA
UHGV-1419140_16	eggNOG-mapper	1277892.M1HNV6_9CAUD	Phage minor structural protein GP20	NA
UHGV-1419140_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1419140_16	Structural annotation	PF06810	NA	NA
UHGV-1419140_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1419140_17	UniRef90	UniRef90_UPI000660942C	phage minor capsid protein	NA
UHGV-1419140_17	eggNOG-mapper	1123302.KB904167_gene516	Phage minor capsid protein 2	NA
UHGV-1419140_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1419140_17	Structural annotation	PF06152	NA	NA
UHGV-1419140_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-1419140_18	UniRef90	UniRef90_A0A139N1U1	Phage minor capsid protein	NA
UHGV-1419140_18	eggNOG-mapper	1239381.K4JTJ5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1419140_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1419140_18	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1419140_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1419140_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1419140_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1419140_19	UniRef90	UniRef90_A0A139N1T5	Phage terminase, large subunit	NA
UHGV-1419140_19	eggNOG-mapper	1123302.KB904167_gene514	Phage terminase, large subunit	NA
UHGV-1419140_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1419140_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1419140_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1419140_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-1419140_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1419140_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1419140_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1419140_20	UniRef90	UniRef90_A0A139N2H9	Phage terminase, small subunit	NA
UHGV-1419140_20	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-1419140_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1419140_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1419140_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1419140_21	PHROG	phrog_9479	NA	unknown function
UHGV-1419140_21	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-1419140_21	Structural annotation	PF15529	NA	NA
UHGV-1419140_22	PHROG	phrog_8680	NA	unknown function
UHGV-1419140_22	UniRef90	UniRef90_A0A139N227	DNA modification methylase	NA
UHGV-1419140_22	eggNOG-mapper	1277892.M1IRA8_9CAUD	NA	NA
UHGV-1419140_22	Pfam	PF14386	NA	DUF4417
UHGV-1419140_22	Structural annotation	PF14386	NA	NA
UHGV-1419140_23	PHROG	phrog_3511	NA	unknown function
UHGV-1419140_23	UniRef90	UniRef90_A0A139N2N4	NA	NA
UHGV-1419140_23	Structural annotation	TIGR01636	NA	NA
UHGV-1419140_25	PHROG	phrog_2003	NA	unknown function
UHGV-1419140_25	UniRef90	UniRef90_UPI000AB188AB	NA	NA
UHGV-1419140_26	PHROG	phrog_3476	NA	unknown function
UHGV-1419140_26	UniRef90	UniRef90_E8ZDM2	NA	NA
UHGV-1419140_27	PHROG	phrog_14577	NA	unknown function
UHGV-1419140_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1419140_28	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1419140_28	UniRef90	UniRef90_A0A139N1U4	NA	NA
UHGV-1419140_28	eggNOG-mapper	120574.Q94M60_9CAUD	magnesium ion binding	NA
UHGV-1419140_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1419140_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1419140_29	eggNOG-mapper	768486.EHR_00720	NA	NA
UHGV-1419140_30	PHROG	phrog_884	NA	unknown function
UHGV-1419140_30	UniRef90	UniRef90_A0A139N1T1	NA	NA
UHGV-1419140_30	eggNOG-mapper	768726.HMPREF9178_1075	NA	NA
UHGV-1419140_30	Pfam	PF07116	NA	DUF1372
UHGV-1419140_30	Structural annotation	PF07116	NA	NA
UHGV-1419140_31	PHROG	phrog_1029	NA	unknown function
UHGV-1419140_31	UniRef90	UniRef90_A0A139N061	Phage-related protein	NA
UHGV-1419140_31	eggNOG-mapper	120574.Q94M62_9CAUD	NA	NA
UHGV-1419140_31	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1419140_32	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1419140_32	UniRef90	UniRef90_A0A8B6LDU6	NA	NA
UHGV-1419140_32	eggNOG-mapper	1123302.KB904167_gene501	NA	NA
UHGV-1419140_33	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1419140_33	PHROG	phrog_36984	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419140_33	UniRef90	UniRef90_A0A139N213	HTH cro/C1-type domain-containing protein	NA
UHGV-1419140_33	eggNOG-mapper	314270.RB2083_1741	transcriptional regulators	NA
UHGV-1419140_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1419140_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1419140_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1419140_34	PHROG	phrog_3947	NA	unknown function
UHGV-1419140_34	UniRef90	UniRef90_A0A139N220	NA	NA
UHGV-1419140_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1419140_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419140_35	UniRef90	UniRef90_A0A4J1R8Y4	Single-stranded DNA-binding protein	NA
UHGV-1419140_35	eggNOG-mapper	1123309.AQYB01000014_gene917	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1419140_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1419140_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1419140_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1419140_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1419140_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1419140_36	PHROG	phrog_24565	NA	unknown function
UHGV-1419140_36	UniRef90	UniRef90_A8ATU1	Gp53	NA
UHGV-1419140_36	eggNOG-mapper	330398.A8ATU1_9CAUD	NA	NA
UHGV-1419140_36	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-1419140_36	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-1419140_37	PHROG	phrog_674	NA	unknown function
UHGV-1419140_37	UniRef90	UniRef90_UPI001CBC7B4C	NA	NA
UHGV-1419140_37	eggNOG-mapper	1239381.K4JU67_9CAUD	NA	NA
UHGV-1419140_37	Pfam	PF07083	NA	DUF1351
UHGV-1419140_37	Structural annotation	PF07083	NA	NA
UHGV-1419140_38	PHROG	phrog_2486	NA	unknown function
UHGV-1419140_38	UniRef90	UniRef90_A0A139N071	NA	NA
UHGV-1419140_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1419140_39	UniRef90	UniRef90_A0A418G4U2	Single-stranded DNA-binding protein	NA
UHGV-1419140_39	eggNOG-mapper	1277892.M1IEW6_9CAUD	ERF superfamily	NA
UHGV-1419140_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-1419140_39	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1419140_40	PHROG	phrog_7964	NA	unknown function
UHGV-1419140_40	UniRef90	UniRef90_UPI0015837E49	polymer-forming cytoskeletal protein	NA
UHGV-1419140_40	eggNOG-mapper	1239381.K4JTL7_9CAUD	NA	NA
UHGV-1419140_41	PHROG	phrog_2273	NA	unknown function
UHGV-1419140_41	UniRef90	UniRef90_U4KJ92	NA	NA
UHGV-1419140_42	PHROG	phrog_33411	NA	unknown function
UHGV-1419140_43	PHROG	phrog_8019	NA	unknown function
UHGV-1419140_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1419140_44	UniRef90	UniRef90_A0A139N1Q1	Phage repressor	NA
UHGV-1419140_44	eggNOG-mapper	537874.B3GVX4_9CAUD	sequence-specific DNA binding	NA
UHGV-1419140_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1419140_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1419140_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1419140_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1419140_45	UniRef90	UniRef90_X8KA59	Peptidase S24-like protein	NA
UHGV-1419140_45	eggNOG-mapper	537874.B3GVX0_9CAUD	sequence-specific DNA binding	NA
UHGV-1419140_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1419140_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1419140_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1419140_45	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA