UHGV-1419446

Genome information

Genome length 35,746 bps

CDS count 52

Completeness 87.45% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-1419446
vOTU ID	vOTU-034717
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0243663
BioSample	SAMN05414927
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.11
Jumbo phage	No

Genome content
Genome length	35,746 bps
GC content	48.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.15%
Average CDS length	643.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419446_3	UniRef90	UniRef90_A0A351F9G2	RHH_1 domain-containing protein	NA
UHGV-1419446_3	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-1419446_5	PHROG	phrog_263	holin	lysis
UHGV-1419446_5	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-1419446_5	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-1419446_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1419446_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1419446_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1419446_6	PHROG	phrog_9428	NA	unknown function
UHGV-1419446_6	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-1419446_6	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-1419446_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1419446_7	PHROG	phrog_435	endolysin	lysis
UHGV-1419446_7	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-1419446_7	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-1419446_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1419446_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1419446_7	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-1419446_10	Structural annotation	PF02973	NA	NA
UHGV-1419446_11	Structural annotation	PF10651, NF009453	NA	NA
UHGV-1419446_13	PHROG	phrog_6616	tail protein	tail
UHGV-1419446_13	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-1419446_13	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1419446_14	PHROG	phrog_1194	NA	unknown function
UHGV-1419446_14	Pfam	PF20458	NA	DUF6711
UHGV-1419446_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1419446_15	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1419446_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1419446_15	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-1419446_15	COG	COG1511	NA	NA
UHGV-1419446_15	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1419446_16	PHROG	phrog_706	NA	unknown function
UHGV-1419446_16	UniRef90	UniRef90_UPI000F54B7AC	Gp15 family bacteriophage protein	NA
UHGV-1419446_16	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-1419446_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1419446_16	Structural annotation	PF06854	NA	NA
UHGV-1419446_17	PHROG	phrog_11299	NA	unknown function
UHGV-1419446_17	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-1419446_17	Structural annotation	PF10666	NA	NA
UHGV-1419446_18	PHROG	phrog_3099	NA	unknown function
UHGV-1419446_18	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-1419446_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1419446_19	PHROG	phrog_3266	tail completion	connector
UHGV-1419446_19	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-1419446_19	Structural annotation	PF20765	NA	NA
UHGV-1419446_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1419446_20	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-1419446_20	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-1419446_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1419446_20	Structural annotation	PF11114	NA	NA
UHGV-1419446_21	PHROG	phrog_3366	NA	unknown function
UHGV-1419446_21	eggNOG-mapper	1304866.K413DRAFT_3040	NA	NA
UHGV-1419446_21	Pfam	PF20536	NA	DUF6751
UHGV-1419446_21	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1419446_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1419446_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-1419446_23	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1419446_23	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1419446_23	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1419446_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1419446_24	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-1419446_24	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1419446_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1419446_24	Structural annotation	PF06810	NA	NA
UHGV-1419446_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1419446_25	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1419446_25	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1419446_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1419446_25	COG	COG2369	NA	NA
UHGV-1419446_25	Structural annotation	PF06152	NA	NA
UHGV-1419446_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-1419446_26	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-1419446_26	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-1419446_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1419446_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1419446_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1419446_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1419446_28	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-1419446_28	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1419446_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1419446_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1419446_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1419446_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1419446_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1419446_32	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1419446_32	UniRef90	UniRef90_UPI001C389DC7	NA	NA
UHGV-1419446_32	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-1419446_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1419446_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1419446_32	Pfam	PF14386	NA	DUF4417
UHGV-1419446_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1419446_32	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-1419446_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1419446_33	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-1419446_33	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1419446_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1419446_33	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1419446_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1419446_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1419446_34	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1419446_34	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-1419446_34	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1419446_35	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-1419446_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1419446_35	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-1419446_35	eggNOG-mapper	1291050.JAGE01000001_gene476	C-5 cytosine-specific DNA methylase	NA
UHGV-1419446_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1419446_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1419446_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1419446_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1419446_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1419446_36	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-1419446_36	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-1419446_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-1419446_36	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1419446_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1419446_36	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1419446_37	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1419446_37	UniRef90	UniRef90_S1N930	Phage replication initiation protein	NA
UHGV-1419446_37	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-1419446_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1419446_37	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1419446_38	PHROG	phrog_2113	NA	unknown function
UHGV-1419446_38	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-1419446_38	eggNOG-mapper	871968.DESME_09725	NA	NA
UHGV-1419446_38	Structural annotation	PF21715	NA	NA
UHGV-1419446_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1419446_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419446_39	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-1419446_39	eggNOG-mapper	1507.HMPREF0262_00434	Single-stranded DNA-binding protein	NA
UHGV-1419446_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1419446_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1419446_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1419446_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1419446_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1419446_41	PHROG	phrog_7566	NA	unknown function
UHGV-1419446_41	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-1419446_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1419446_42	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1419446_42	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1419446_42	Structural annotation	PF05772	NA	NA
UHGV-1419446_43	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1419446_43	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-1419446_43	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1419446_43	Pfam	PF06378	NA	DUF1071
UHGV-1419446_43	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1419446_45	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1419446_45	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1419446_45	UniRef90	UniRef90_A0A3D5LLL5	Beta sliding clamp	NA
UHGV-1419446_45	eggNOG-mapper	411471.SUBVAR_07116	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1419446_45	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1419446_45	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1419446_45	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1419446_45	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1419446_45	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1419446_45	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1419446_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1419446_46	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1419446_46	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-1419446_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1419446_46	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-1419446_47	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1419446_47	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1419446_47	UniRef90	UniRef90_A0A316L965	DNA methylase N-4	NA
UHGV-1419446_47	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-1419446_47	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1419446_47	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1419446_47	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1419446_47	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1419446_50	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1419446_50	PHROG	phrog_18750	NA	unknown function
UHGV-1419446_50	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-1419446_50	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-1419446_50	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1419446_50	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1419446_50	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1419446_51	PHROG	phrog_6058	NA	unknown function
UHGV-1419446_51	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-1419446_51	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-1419446_51	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1419446_52	PHROG	phrog_27197	NA	unknown function
UHGV-1419446_52	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1419446_52	COG	COG5164	Transcription elongation factor SPT5	NA