UHGV-1419662

Genome information

Genome length 21,758 bps

CDS count 31

Completeness 61.84% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1419662
vOTU ID	vOTU-034721
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0159584
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.17
Jumbo phage	No

Genome content
Genome length	21,758 bps
GC content	39.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.42%
Average CDS length	661.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419662_1	Structural annotation	PF10651	NA	NA
UHGV-1419662_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1419662_2	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-1419662_2	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-1419662_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1419662_2	COG	COG1511	NA	NA
UHGV-1419662_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1419662_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1419662_3	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-1419662_3	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1419662_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1419662_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1419662_4	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1419662_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1419662_4	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-1419662_4	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-1419662_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1419662_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1419662_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1419662_5	Structural annotation	PF11836	NA	NA
UHGV-1419662_6	PHROG	phrog_88	major tail protein	tail
UHGV-1419662_6	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-1419662_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1419662_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1419662_7	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-1419662_7	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1419662_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1419662_7	Structural annotation	TIGR01725	NA	NA
UHGV-1419662_8	eggNOG-mapper	879305.HMPREF9290_0134	NA	NA
UHGV-1419662_8	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1419662_9	PHROG	phrog_19734	NA	unknown function
UHGV-1419662_9	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-1419662_9	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-1419662_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1419662_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1419662_10	PHROG	phrog_749	NA	unknown function
UHGV-1419662_10	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-1419662_10	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-1419662_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-1419662_11	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-1419662_11	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-1419662_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1419662_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1419662_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1419662_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1419662_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1419662_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1419662_12	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1419662_12	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-1419662_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1419662_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1419662_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1419662_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-1419662_13	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-1419662_13	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-1419662_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1419662_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1419662_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1419662_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1419662_14	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1419662_14	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1419662_14	UniRef90	UniRef90_A0A412UM21	Methyltransferase	NA
UHGV-1419662_14	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-1419662_14	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1419662_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1419662_14	COG	COG0863	DNA modification methylase	NA
UHGV-1419662_14	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1419662_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1419662_15	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-1419662_15	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-1419662_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1419662_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1419662_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1419662_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1419662_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1419662_16	UniRef90	UniRef90_A0A7C6U502	P27 family phage terminase small subunit	NA
UHGV-1419662_16	eggNOG-mapper	1235798.C817_02582	NA	NA
UHGV-1419662_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1419662_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1419662_17	PHROG	phrog_20533	NA	unknown function
UHGV-1419662_17	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-1419662_17	eggNOG-mapper	1123058.KB894251_gene2369	NA	NA
UHGV-1419662_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1419662_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419662_18	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-1419662_18	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-1419662_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1419662_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1419662_19	Structural annotation	TIGR01636	NA	NA
UHGV-1419662_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1419662_20	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-1419662_20	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1419662_22	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419662_22	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-1419662_22	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1419662_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1419662_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1419662_22	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1419662_25	PHROG	phrog_824	NA	unknown function
UHGV-1419662_25	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-1419662_25	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1419662_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1419662_25	Structural annotation	PF08774	NA	NA
UHGV-1419662_27	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-1419662_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1419662_28	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1419662_28	UniRef90	UniRef90_A0A329UQ77	ParB domain-containing protein	NA
UHGV-1419662_28	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-1419662_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1419662_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1419662_30	PHROG	phrog_6058	NA	unknown function
UHGV-1419662_30	Structural annotation	NF033787	NA	NA
UHGV-1419662_31	Pfam	PF09643	YopX protein	YopX