UHGV-1419797

Genome information

Genome length 21,126 bps

CDS count 40

Completeness 51.76% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1419797
vOTU ID	vOTU-034724
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0154789
BioSample	SAMN02333970
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.04
Jumbo phage	No

Genome content
Genome length	21,126 bps
GC content	53.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	90.05%
Average CDS length	483.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419797_1	PHROG	phrog_533	portal protein	head and packaging
UHGV-1419797_1	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-1419797_1	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1419797_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1419797_1	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1419797_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1419797_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1419797_2	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1419797_2	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1419797_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1419797_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1419797_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1419797_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1419797_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1419797_4	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1419797_4	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1419797_4	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-1419797_4	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1419797_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1419797_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1419797_4	COG	COG0863	DNA modification methylase	NA
UHGV-1419797_4	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1419797_5	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1419797_5	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1419797_5	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-1419797_5	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1419797_5	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1419797_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1419797_5	COG	COG0863	DNA modification methylase	NA
UHGV-1419797_5	Structural annotation	PF02195, MF_02015, TIGR00180, COG5119	NA	NA
UHGV-1419797_6	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-1419797_6	Structural annotation	TIGR01636	NA	NA
UHGV-1419797_9	PHROG	phrog_22543	NA	unknown function
UHGV-1419797_11	PHROG	phrog_3136	NA	unknown function
UHGV-1419797_11	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-1419797_11	Pfam	PF04266	ASCH domain	ASCH
UHGV-1419797_11	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1419797_11	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1419797_15	PHROG	phrog_22529	NA	unknown function
UHGV-1419797_15	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-1419797_15	eggNOG-mapper	411463.EUBVEN_00667	3D domain	NA
UHGV-1419797_15	Pfam	PF06725	3D domain	3D
UHGV-1419797_15	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1419797_15	Structural annotation	PF06725, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-1419797_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1419797_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1419797_17	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1419797_17	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-1419797_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1419797_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1419797_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1419797_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1419797_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1419797_19	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-1419797_19	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1419797_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1419797_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1419797_19	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1419797_20	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-1419797_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1419797_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1419797_21	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1419797_21	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1419797_21	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1419797_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1419797_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1419797_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1419797_22	PHROG	phrog_9804	NA	unknown function
UHGV-1419797_22	UniRef90	UniRef90_UPI0015C5D332	replicative helicase loader/inhibitor	NA
UHGV-1419797_22	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-1419797_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1419797_22	Structural annotation	PF11417	NA	NA
UHGV-1419797_23	PHROG	phrog_15768	NA	unknown function
UHGV-1419797_23	eggNOG-mapper	1410650.JHWL01000003_gene2848	NA	NA
UHGV-1419797_23	Pfam	PF19808	NA	DUF6291
UHGV-1419797_23	Structural annotation	PF19808	NA	NA
UHGV-1419797_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1419797_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419797_24	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-1419797_24	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-1419797_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1419797_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1419797_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1419797_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1419797_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1419797_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419797_25	UniRef90	UniRef90_S5NS99	HNHc domain-containing protein	NA
UHGV-1419797_25	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-1419797_25	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1419797_25	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1419797_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1419797_25	Structural annotation	PF07463, PF13392	NA	NA
UHGV-1419797_26	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1419797_26	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1419797_26	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1419797_26	Pfam	PF05772	NinB protein	NinB
UHGV-1419797_26	Structural annotation	PF05772	NA	NA
UHGV-1419797_27	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1419797_27	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-1419797_27	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-1419797_27	Pfam	PF04404	ERF superfamily	ERF
UHGV-1419797_27	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1419797_29	Structural annotation	PF00412	NA	NA
UHGV-1419797_32	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-1419797_32	Structural annotation	PF11112, COG3311	NA	NA
UHGV-1419797_33	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-1419797_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1419797_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1419797_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1419797_35	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-1419797_35	Structural annotation	NF007257, COG1396	NA	NA
UHGV-1419797_36	eggNOG-mapper	742740.HMPREF9474_03483	NA	NA
UHGV-1419797_36	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-1419797_39	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-1419797_40	KOfam	K14059	int; integrase	NA
UHGV-1419797_40	PHROG	phrog_1	integrase	integration and excision
UHGV-1419797_40	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-1419797_40	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-1419797_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1419797_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1419797_40	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA