UHGV-1419817

Genome information

Genome length 24,311 bps

CDS count 34

Completeness 65.99% (medium-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-1419817
vOTU ID	vOTU-023506
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0177628
BioSample	SAMN00065654
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.31
Jumbo phage	No

Genome content
Genome length	24,311 bps
GC content	29.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	89.72%
Average CDS length	644.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419817_2	PHROG	phrog_1066	NA	unknown function
UHGV-1419817_2	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-1419817_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1419817_3	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-1419817_3	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1419817_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1419817_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1419817_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1419817_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1419817_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-1419817_4	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-1419817_4	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1419817_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1419817_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1419817_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1419817_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1419817_5	KOfam	K06904	NA	NA
UHGV-1419817_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1419817_5	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-1419817_5	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-1419817_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1419817_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1419817_5	COG	COG3740	Phage head maturation protease	NA
UHGV-1419817_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1419817_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-1419817_6	UniRef90	UniRef90_A0A8J8M8F5	Phage major capsid protein	NA
UHGV-1419817_6	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-1419817_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1419817_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1419817_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1419817_7	PHROG	phrog_5223	neck protein	connector
UHGV-1419817_7	UniRef90	UniRef90_UPI0017869A34	head-tail connector protein	NA
UHGV-1419817_7	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-1419817_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1419817_8	eggNOG-mapper	272626.lin2574	head-tail adaptor	NA
UHGV-1419817_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1419817_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1419817_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1419817_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1419817_9	UniRef90	UniRef90_A0A559U366	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-1419817_9	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-1419817_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1419817_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1419817_10	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-1419817_10	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-1419817_10	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1419817_11	PHROG	phrog_88	major tail protein	tail
UHGV-1419817_11	UniRef90	UniRef90_UPI001CBE6475	phage tail protein	NA
UHGV-1419817_11	eggNOG-mapper	1469948.JPNB01000001_gene698	phage major tail protein, phi13 family	NA
UHGV-1419817_11	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-1419817_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1419817_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1419817_12	PHROG	phrog_709	NA	unknown function
UHGV-1419817_12	Structural annotation	PF11836	NA	NA
UHGV-1419817_14	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1419817_14	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1419817_14	UniRef90	UniRef90_A0A3R6SN90	Phage tail tape measure protein	NA
UHGV-1419817_14	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-1419817_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1419817_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1419817_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1419817_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1419817_15	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1419817_15	UniRef90	UniRef90_R7HFV1	Surface lipoprotein-related family protein	NA
UHGV-1419817_15	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-1419817_15	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1419817_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1419817_15	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-1419817_16	PHROG	phrog_13564	minor tail protein	tail
UHGV-1419817_16	UniRef90	UniRef90_R6EKZ3	Putative phage protein	NA
UHGV-1419817_16	eggNOG-mapper	1140002.I570_04001	Baseplate protein	NA
UHGV-1419817_16	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-1419817_16	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1419817_17	PHROG	phrog_7064	tail protein	tail
UHGV-1419817_17	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-1419817_17	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-1419817_18	Structural annotation	PF20747	NA	NA
UHGV-1419817_23	Structural annotation	PF10651, PF15432, TIGR03711	NA	NA
UHGV-1419817_25	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-1419817_25	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1419817_26	PHROG	phrog_937	hemolysin	other
UHGV-1419817_26	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-1419817_27	Structural annotation	PF16938	NA	NA
UHGV-1419817_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1419817_29	PHROG	phrog_3088	amidase	lysis
UHGV-1419817_29	UniRef90	UniRef90_A0A1Q6JUS1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1419817_29	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1419817_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1419817_29	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1419817_29	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1419817_30	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419817_30	UniRef90	UniRef90_UPI00194FB38C	alcohol dehydrogenase	NA
UHGV-1419817_30	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-1419817_30	Structural annotation	PF00847, PF18337	NA	NA
UHGV-1419817_31	PHROG	phrog_2329	NA	unknown function
UHGV-1419817_31	UniRef90	UniRef90_A0A8I1VFN4	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1419817_31	eggNOG-mapper	1321779.HMPREF1984_00114	NA	NA
UHGV-1419817_31	Structural annotation	PF04014, NF007312, COG2336	NA	NA