UHGV-1420499

Genome information

Genome length 20,937 bps

CDS count 37

Completeness 53.74% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1420499
vOTU ID	vOTU-025122
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0153335
BioSample	SAMEA2738110
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.69
Jumbo phage	No

Genome content
Genome length	20,937 bps
GC content	38.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.83%
Average CDS length	516.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1420499_1	PHROG	phrog_10	major head protein	head and packaging
UHGV-1420499_1	UniRef90	UniRef90_A0A4D6B0J4	Major capsid protein	NA
UHGV-1420499_1	eggNOG-mapper	1282664.H354_07690	Phage capsid family	NA
UHGV-1420499_1	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1420499_2	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1420499_2	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1420499_2	UniRef90	UniRef90_A0A428HZ00	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1420499_2	eggNOG-mapper	999425.HMPREF9186_02034	Belongs to the peptidase S14 family	NA
UHGV-1420499_2	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1420499_2	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1420499_2	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1420499_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1420499_3	UniRef90	UniRef90_A0A4D6B0L6	Portal protein	NA
UHGV-1420499_3	eggNOG-mapper	999425.HMPREF9186_02033	portal protein	NA
UHGV-1420499_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1420499_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1420499_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1420499_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1420499_4	PHROG	phrog_903	NA	unknown function
UHGV-1420499_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1420499_5	UniRef90	UniRef90_X8K5U6	Putative phage terminase, large subunit	NA
UHGV-1420499_5	eggNOG-mapper	999425.HMPREF9186_02031	Terminase	NA
UHGV-1420499_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1420499_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1420499_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1420499_5	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1420499_6	PHROG	phrog_2343	terminase small subunit	head and packaging
UHGV-1420499_6	UniRef90	UniRef90_A0A5C5TE72	P27 family phage terminase small subunit	NA
UHGV-1420499_6	eggNOG-mapper	999425.HMPREF9186_02030	NA	NA
UHGV-1420499_6	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1420499_7	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1420499_7	PHROG	phrog_216	integrase	integration and excision
UHGV-1420499_7	UniRef90	UniRef90_A0A4D6AD72	Site-specific recombinase	NA
UHGV-1420499_7	eggNOG-mapper	999425.HMPREF9186_02028	Phage integrase family	NA
UHGV-1420499_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1420499_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1420499_7	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1420499_8	UniRef90	UniRef90_K8MR92	RinA family phage transcriptional regulator	NA
UHGV-1420499_8	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1420499_8	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1420499_9	PHROG	phrog_29132	NA	unknown function
UHGV-1420499_11	PHROG	phrog_13581	NA	unknown function
UHGV-1420499_11	eggNOG-mapper	768726.HMPREF9178_1076	NA	NA
UHGV-1420499_12	PHROG	phrog_3606	NA	unknown function
UHGV-1420499_12	AcrCatalog	cluster_1646	NA	NA
UHGV-1420499_13	PHROG	phrog_4019	NA	unknown function
UHGV-1420499_13	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-1420499_14	PHROG	phrog_121	NA	unknown function
UHGV-1420499_14	UniRef90	UniRef90_UPI00069F9652	NA	NA
UHGV-1420499_14	eggNOG-mapper	585203.SMSK564_1299	NA	NA
UHGV-1420499_14	Pfam	PF07852	NA	DUF1642
UHGV-1420499_14	Structural annotation	PF07852	NA	NA
UHGV-1420499_15	PHROG	phrog_121	NA	unknown function
UHGV-1420499_15	UniRef90	UniRef90_UPI0012FF6032	NA	NA
UHGV-1420499_15	eggNOG-mapper	1095737.HMPREF1110_1213	NA	NA
UHGV-1420499_15	Pfam	PF07852	NA	DUF1642
UHGV-1420499_15	Structural annotation	PF07852	NA	NA
UHGV-1420499_16	UniRef90	UniRef90_UPI00068B8236	Ig-like domain-containing protein	NA
UHGV-1420499_16	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-1420499_16	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-1420499_16	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-1420499_16	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-1420499_16	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-1420499_16	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-1420499_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1420499_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1420499_17	UniRef90	UniRef90_A0A414PKJ6	Single-stranded DNA-binding protein	NA
UHGV-1420499_17	eggNOG-mapper	768726.HMPREF9178_1078	Single-strand binding protein family	NA
UHGV-1420499_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1420499_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1420499_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1420499_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1420499_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1420499_19	UniRef90	UniRef90_A0A4D6B234	HTH cro/C1-type domain-containing protein	NA
UHGV-1420499_19	Structural annotation	PF01381, MF_00535, NF041575, COG3655	NA	NA
UHGV-1420499_20	PHROG	phrog_236	nucleotide kinase	other
UHGV-1420499_20	UniRef90	UniRef90_UPI0019553FA4	NA	NA
UHGV-1420499_20	eggNOG-mapper	1403946.Q615_SPAC00127G0145	NA	NA
UHGV-1420499_20	Pfam	PF11753	NA	DUF3310
UHGV-1420499_20	Structural annotation	PF11753	NA	NA
UHGV-1420499_21	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-1420499_21	UniRef90	UniRef90_A0A4D6B090	DNA-binding protein	NA
UHGV-1420499_21	eggNOG-mapper	585203.SMSK564_1297	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1420499_21	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1420499_21	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1420499_22	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1420499_22	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1420499_22	UniRef90	UniRef90_A0A1F1DLT2	AAA domain-containing protein	NA
UHGV-1420499_22	eggNOG-mapper	888049.HMPREF8578_0284	DNA-dependent DNA replication	NA
UHGV-1420499_22	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1420499_22	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1420499_22	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1420499_23	PHROG	phrog_1163	NA	unknown function
UHGV-1420499_23	UniRef90	UniRef90_A0A7X2X364	DnaD domain protein	NA
UHGV-1420499_23	eggNOG-mapper	1214184.ALKY01000039_gene945	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1420499_23	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1420499_23	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1420499_23	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1420499_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1420499_23	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG0640	NA	NA
UHGV-1420499_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1420499_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1420499_24	UniRef90	UniRef90_A0A1F0YCD7	Replicative DNA helicase	NA
UHGV-1420499_24	eggNOG-mapper	1123314.AUIO01000016_gene818	Participates in initiation and elongation during chromosome replication	NA
UHGV-1420499_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1420499_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1420499_24	NCBIFam	NF004384.0	replicative DNA helicase	NA
UHGV-1420499_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-1420499_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1420499_26	PHROG	phrog_5866	NA	unknown function
UHGV-1420499_26	UniRef90	UniRef90_A0A4Q2FFR2	HTH merR-type domain-containing protein	NA
UHGV-1420499_26	eggNOG-mapper	35344.A0A097PAT8_BPT12	NA	NA
UHGV-1420499_26	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1420499_27	PHROG	phrog_28560	NA	unknown function
UHGV-1420499_29	PHROG	phrog_9949	NA	unknown function
UHGV-1420499_29	AcrCatalog	cluster_10982	NA	NA
UHGV-1420499_30	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1420499_30	UniRef90	UniRef90_K8MKE3	ORF6C domain-containing protein	NA
UHGV-1420499_30	eggNOG-mapper	999425.HMPREF9186_02003	ORF6C domain	NA
UHGV-1420499_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1420499_30	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1420499_30	Structural annotation	PF10552	NA	NA
UHGV-1420499_31	PHROG	phrog_1733	NA	unknown function
UHGV-1420499_31	UniRef90	UniRef90_A0A8B1YLF4	NA	NA
UHGV-1420499_31	eggNOG-mapper	646413.C5IUM1_9CAUD	NA	NA
UHGV-1420499_31	Pfam	PF11300	NA	DUF3102
UHGV-1420499_31	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1420499_33	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-1420499_33	UniRef90	UniRef90_A0A1F1CD60	DNA-binding protein	NA
UHGV-1420499_33	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1420499_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1420499_34	UniRef90	UniRef90_A0A7G1ITM4	HTH cro/C1-type domain-containing protein	NA
UHGV-1420499_34	eggNOG-mapper	1282664.H354_07515	sequence-specific DNA binding	NA
UHGV-1420499_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1420499_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1420499_34	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1420499_35	PHROG	phrog_87	metallo-protease	other
UHGV-1420499_35	UniRef90	UniRef90_A0A1F1DLS4	Peptidase	NA
UHGV-1420499_35	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-1420499_35	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1420499_35	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1420499_35	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-1420499_36	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1420499_36	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1420499_36	UniRef90	UniRef90_A0A4D6AZ99	DinG family ATP-dependent helicase	NA
UHGV-1420499_36	eggNOG-mapper	1266845.Q783_01865	DNA polymerase III	NA
UHGV-1420499_36	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1420499_36	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1420499_36	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1420499_36	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-1420499_36	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1420499_36	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-1420499_37	PHROG	phrog_23783	integrase	integration and excision
UHGV-1420499_37	UniRef90	UniRef90_UPI00113F850A	Arm DNA-binding domain-containing protein	NA
UHGV-1420499_37	eggNOG-mapper	999425.HMPREF9186_01996	Belongs to the 'phage' integrase family	NA
UHGV-1420499_37	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1420499_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1420499_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA