UHGV-1420603

Genome information

Genome length 20,845 bps

CDS count 21

Completeness 55.83% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1420603
vOTU ID	vOTU-018927
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0152641
BioSample	SAMN02334274
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.16
Jumbo phage	No

Genome content
Genome length	20,845 bps
GC content	45.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	91.34%
Average CDS length	914.57 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1420603_1	PHROG	phrog_1281	NA	unknown function
UHGV-1420603_1	UniRef90	UniRef90_A0A1C7I6F1	NA	NA
UHGV-1420603_1	eggNOG-mapper	411459.RUMOBE_01368	Phage-associated protein	NA
UHGV-1420603_1	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1420603_1	COG	COG3600	NA	NA
UHGV-1420603_1	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1420603_3	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1420603_3	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-1420603_3	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-1420603_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1420603_4	PHROG	phrog_1066	NA	unknown function
UHGV-1420603_4	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-1420603_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1420603_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1420603_5	UniRef90	UniRef90_UPI00148AEB9A	terminase large subunit	NA
UHGV-1420603_5	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-1420603_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1420603_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1420603_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1420603_5	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1420603_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-1420603_7	UniRef90	UniRef90_UPI00148B140C	phage portal protein	NA
UHGV-1420603_7	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1420603_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1420603_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1420603_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1420603_8	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1420603_8	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1420603_8	UniRef90	UniRef90_UPI00148AFF63	Clp protease ClpP	NA
UHGV-1420603_8	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-1420603_8	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1420603_8	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1420603_8	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1420603_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-1420603_9	UniRef90	UniRef90_UPI00148B248C	phage major capsid protein	NA
UHGV-1420603_9	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-1420603_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1420603_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1420603_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1420603_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1420603_10	PHROG	phrog_5223	neck protein	connector
UHGV-1420603_10	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-1420603_10	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-1420603_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1420603_11	UniRef90	UniRef90_A0A2V2GTA0	Phage head-tail adapter protein	NA
UHGV-1420603_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1420603_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1420603_12	UniRef90	UniRef90_UPI00148AE38B	HK97 gp10 family phage protein	NA
UHGV-1420603_12	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-1420603_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1420603_12	Structural annotation	TIGR01725	NA	NA
UHGV-1420603_13	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-1420603_13	Structural annotation	PF05657	NA	NA
UHGV-1420603_14	PHROG	phrog_88	major tail protein	tail
UHGV-1420603_14	UniRef90	UniRef90_UPI00148B0F18	major tail protein	NA
UHGV-1420603_14	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-1420603_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1420603_14	COG	COG5492	NA	NA
UHGV-1420603_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1420603_15	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-1420603_15	Structural annotation	PF11836	NA	NA
UHGV-1420603_17	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-1420603_17	PHROG	phrog_5218	NA	unknown function
UHGV-1420603_17	UniRef90	UniRef90_UPI0011DE5327	phage tail tape measure protein	NA
UHGV-1420603_17	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-1420603_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1420603_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1420603_17	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-1420603_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1420603_18	UniRef90	UniRef90_UPI00138FB3D0	phage tail protein	NA
UHGV-1420603_18	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-1420603_18	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1420603_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-1420603_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1420603_19	PHROG	phrog_13289	tail protein	tail
UHGV-1420603_19	UniRef90	UniRef90_A0A4P6LSM5	Prophage_tail domain-containing protein	NA
UHGV-1420603_19	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1420603_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1420603_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1420603_19	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1420603_19	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1420603_21	PHROG	phrog_16573	NA	unknown function
UHGV-1420603_21	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA