UHGV-1421228

Genome information

Genome length 22,966 bps

CDS count 40

Completeness 62.29% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1421228
vOTU ID	vOTU-034756
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0168338
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.65
Jumbo phage	No

Genome content
Genome length	22,966 bps
GC content	35.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	95.04%
Average CDS length	548.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1421228_1	eggNOG-mapper	1408823.AXUS01000025_gene2633	phage tail	NA
UHGV-1421228_1	COG	COG4722	Phage-related protein YomH	NA
UHGV-1421228_2	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-1421228_2	PHROG	phrog_17321	NA	unknown function
UHGV-1421228_2	UniRef90	UniRef90_A0A135YZ87	Phage tail tape measure protein, TP901 family	NA
UHGV-1421228_2	eggNOG-mapper	565653.EGBG_01978	NA	NA
UHGV-1421228_2	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1421228_2	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1421228_2	COG	COG5283	Phage-related tail protein	NA
UHGV-1421228_2	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1421228_3	PHROG	phrog_5802	NA	unknown function
UHGV-1421228_4	UniRef90	UniRef90_A0A2T6EKI5	Phage tail protein	NA
UHGV-1421228_4	eggNOG-mapper	1408823.AXUS01000025_gene2628	NA	NA
UHGV-1421228_4	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1421228_5	PHROG	phrog_5509	neck protein	connector
UHGV-1421228_5	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-1421228_5	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1421228_6	eggNOG-mapper	1423775.BAMN01000009_gene392	NA	NA
UHGV-1421228_7	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1421228_7	UniRef90	UniRef90_A0A135YZ43	Putative phage head-tail adaptor	NA
UHGV-1421228_7	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-1421228_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1421228_8	PHROG	phrog_749	NA	unknown function
UHGV-1421228_8	UniRef90	UniRef90_UPI0004626FF9	phage gp6-like head-tail connector protein	NA
UHGV-1421228_8	eggNOG-mapper	1408823.AXUS01000025_gene2624	NA	NA
UHGV-1421228_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1421228_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-1421228_10	UniRef90	UniRef90_UPI00046483ED	phage major capsid protein	NA
UHGV-1421228_10	eggNOG-mapper	1408823.AXUS01000025_gene2623	Phage capsid family	NA
UHGV-1421228_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1421228_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1421228_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1421228_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1421228_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1421228_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1421228_11	UniRef90	UniRef90_A0A135YZ81	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1421228_11	eggNOG-mapper	1450694.BTS2_0542	Serine dehydrogenase proteinase	NA
UHGV-1421228_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1421228_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1421228_11	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1421228_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-1421228_12	UniRef90	UniRef90_A0A135YZ93	Phage portal protein, HK97 family	NA
UHGV-1421228_12	eggNOG-mapper	1408823.AXUS01000025_gene2677	Phage portal protein, HK97 family	NA
UHGV-1421228_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1421228_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1421228_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1421228_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1421228_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1421228_13	UniRef90	UniRef90_A0A135YZ54	Putative phage terminase, large subunit	NA
UHGV-1421228_13	eggNOG-mapper	1408823.AXUS01000025_gene2676	Phage terminase-like protein large subunit	NA
UHGV-1421228_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1421228_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1421228_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1421228_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1421228_14	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1421228_14	UniRef90	UniRef90_A0A135YZ63	Phage terminase, small subunit, P27 family	NA
UHGV-1421228_14	eggNOG-mapper	1408823.AXUS01000025_gene2675	NA	NA
UHGV-1421228_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1421228_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1421228_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1421228_15	UniRef90	UniRef90_A0A135YZ50	HNHc domain-containing protein	NA
UHGV-1421228_15	eggNOG-mapper	1408823.AXUS01000025_gene2674	HNH nucleases	NA
UHGV-1421228_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1421228_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1421228_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1421228_18	PHROG	phrog_216	integrase	integration and excision
UHGV-1421228_18	UniRef90	UniRef90_D3MU59	Site-specific recombinase, phage integrase family	NA
UHGV-1421228_18	eggNOG-mapper	596329.HMPREF0631_1365	Site-specific recombinase, phage integrase family	NA
UHGV-1421228_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1421228_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1421228_18	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1421228_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1421228_19	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-1421228_19	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-1421228_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1421228_19	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1421228_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1421228_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1421228_21	UniRef90	UniRef90_UPI00189B5A23	DNA cytosine methyltransferase	NA
UHGV-1421228_21	eggNOG-mapper	1211817.CCAT010000049_gene2479	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-1421228_21	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1421228_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1421228_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1421228_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1421228_21	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1421228_24	PHROG	phrog_236	nucleotide kinase	other
UHGV-1421228_24	UniRef90	UniRef90_UPI00197EBCF6	NA	NA
UHGV-1421228_24	eggNOG-mapper	1219626.HMPREF1639_07100	NA	NA
UHGV-1421228_24	Pfam	PF11753	NA	DUF3310
UHGV-1421228_25	Structural annotation	PF18359, NF037951, COG4466	NA	NA
UHGV-1421228_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1421228_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1421228_28	UniRef90	UniRef90_A0A6N7X4U3	Single-stranded DNA-binding protein	NA
UHGV-1421228_28	eggNOG-mapper	596329.HMPREF0631_1361	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1421228_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1421228_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1421228_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1421228_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1421228_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1421228_29	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-1421228_30	PHROG	phrog_19935	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1421228_30	UniRef90	UniRef90_A0A291JHW8	ASCH domain-containing protein	NA
UHGV-1421228_30	eggNOG-mapper	1035196.HMPREF9998_01730	NA	NA
UHGV-1421228_30	Pfam	PF12961	NA	DUF3850
UHGV-1421228_30	COG	COG4043	ASC-1 homology (ASCH) domain, predicted RNA-binding domain	NA
UHGV-1421228_32	PHROG	phrog_3205	NA	unknown function
UHGV-1421228_32	UniRef90	UniRef90_D9J0I7	Gp40	NA
UHGV-1421228_32	eggNOG-mapper	1035196.HMPREF9998_01732	NA	NA
UHGV-1421228_34	UniRef90	UniRef90_A0A135YZ30	YopX domain-containing protein	NA
UHGV-1421228_34	Pfam	PF09643	YopX protein	YopX
UHGV-1421228_36	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1421228_36	UniRef90	UniRef90_D3MU50	Phage replisome organizer N-terminal domain protein	NA
UHGV-1421228_36	eggNOG-mapper	596329.HMPREF0631_1356	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1421228_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1421228_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1421228_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1421228_36	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-1421228_40	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1421228_40	UniRef90	UniRef90_A0A135YPV3	BRO family protein	NA
UHGV-1421228_40	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-1421228_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1421228_40	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1421228_40	COG	COG3617	Prophage antirepressor	NA
UHGV-1421228_40	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA