UHGV-1421233

Genome information

Genome length 22,967 bps

CDS count 33

Completeness 63.10% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-1421233
vOTU ID	vOTU-018266
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0168351
BioSample	SAMN06164548
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.38
Jumbo phage	No

Genome content
Genome length	22,967 bps
GC content	50.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	95.74%
Average CDS length	670.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1421233_3	PHROG	phrog_9107	NA	unknown function
UHGV-1421233_3	eggNOG-mapper	562743.JH976434_gene1036	NA	NA
UHGV-1421233_6	PHROG	phrog_874	NA	unknown function
UHGV-1421233_6	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-1421233_6	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1421233_6	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1421233_8	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1421233_8	UniRef90	UniRef90_UPI000CF2C653	NA	NA
UHGV-1421233_8	eggNOG-mapper	742735.HMPREF9467_00722	NA	NA
UHGV-1421233_8	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1421233_9	UniRef90	UniRef90_A0A1L5KK68	Cytochrome oxidase maturation protein cbb3-type	NA
UHGV-1421233_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1421233_10	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-1421233_10	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-1421233_10	Structural annotation	PF02996	NA	NA
UHGV-1421233_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1421233_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1421233_11	UniRef90	UniRef90_A0A355D6H0	Terminase small subunit	NA
UHGV-1421233_11	eggNOG-mapper	1121344.JHZO01000003_gene978	Terminase small subunit	NA
UHGV-1421233_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1421233_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1421233_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1421233_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1421233_12	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1421233_12	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-1421233_12	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-1421233_12	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1421233_12	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1421233_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-1421233_12	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1421233_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-1421233_13	UniRef90	UniRef90_UPI00067FAA9B	phage portal protein	NA
UHGV-1421233_13	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-1421233_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1421233_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1421233_14	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-1421233_14	UniRef90	UniRef90_R6RAU0	Phage minor capsid protein 2	NA
UHGV-1421233_14	eggNOG-mapper	86416.Clopa_2539	Phage minor capsid protein 2	NA
UHGV-1421233_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1421233_14	Pfam	PF21814	NA	DUF6883
UHGV-1421233_14	Structural annotation	PF06152, PF21814	NA	NA
UHGV-1421233_17	Structural annotation	PF06810	NA	NA
UHGV-1421233_18	PHROG	phrog_247	major head protein	head and packaging
UHGV-1421233_18	UniRef90	UniRef90_D3ANA7	Putative coat protein	NA
UHGV-1421233_18	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-1421233_18	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1421233_19	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-1421233_19	eggNOG-mapper	632518.Calow_0834	NA	NA
UHGV-1421233_19	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-1421233_19	Structural annotation	PF20557	NA	NA
UHGV-1421233_20	Structural annotation	PF10665, MF_01370, TIGR01563, COG5614	NA	NA
UHGV-1421233_21	UniRef90	UniRef90_A0A832LCL1	HK97 gp10 family phage protein	NA
UHGV-1421233_21	eggNOG-mapper	548476.cauri_1917	NA	NA
UHGV-1421233_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1421233_21	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-1421233_22	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1421233_22	Structural annotation	PF12691	NA	NA
UHGV-1421233_23	PHROG	phrog_88	major tail protein	tail
UHGV-1421233_23	UniRef90	UniRef90_R6VAJ3	Phage major tail protein phi13 family	NA
UHGV-1421233_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1421233_23	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1421233_26	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1421233_26	UniRef90	UniRef90_A0A6I5FYE2	Phage tail tape measure protein	NA
UHGV-1421233_26	eggNOG-mapper	397287.C807_00294	NA	NA
UHGV-1421233_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1421233_27	UniRef90	UniRef90_R6UHM6	Phage-related putative tail protein	NA
UHGV-1421233_27	eggNOG-mapper	1460635.JCM19038_3477	Phage tail protein	NA
UHGV-1421233_27	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1421233_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-1421233_27	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1421233_28	PHROG	phrog_538	minor tail protein	tail
UHGV-1421233_28	UniRef90	UniRef90_UPI0006C82C74	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1421233_28	eggNOG-mapper	431943.CKL_4055	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1421233_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1421233_28	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1421233_29	PHROG	phrog_1220	head protein	head and packaging
UHGV-1421233_29	eggNOG-mapper	1121087.AUCK01000002_gene2490	NA	NA
UHGV-1421233_29	Structural annotation	PF20747	NA	NA
UHGV-1421233_30	PHROG	phrog_6977	minor tail protein	tail
UHGV-1421233_32	PHROG	phrog_2310	NA	unknown function
UHGV-1421233_33	UniRef90	UniRef90_A0A7C7EVC4	MurNAc-LAA domain-containing protein (Fragment)	NA
UHGV-1421233_33	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1421233_33	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA