UHGV-1421334

Genome information

Genome length 32,825 bps

CDS count 55

Completeness 63.34% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-1421334
vOTU ID	vOTU-034757
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0227429
BioSample	SAMEA2152938
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.12
Jumbo phage	No

Genome content
Genome length	32,825 bps
GC content	52.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.85%
Average CDS length	565.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1421334_2	Pfam	PF13542	Helix-turn-helix domain of transposase family ISL3	HTH_Tnp_ISL3
UHGV-1421334_2	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-1421334_4	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-1421334_5	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-1421334_7	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-1421334_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1421334_7	COG	COG3103	NA	NA
UHGV-1421334_7	Structural annotation	PF18342, PF05382, NF040670, COG4991	NA	NA
UHGV-1421334_9	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-1421334_9	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-1421334_11	Structural annotation	PF10651, PF07703, MF_04116, NF032891, COG4326	NA	NA
UHGV-1421334_12	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-1421334_12	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-1421334_12	eggNOG-mapper	935948.KE386495_gene1321	TIGRFAM phage minor structural protein	NA
UHGV-1421334_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1421334_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1421334_12	COG	COG4926	Phage-related protein	NA
UHGV-1421334_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1421334_13	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1421334_14	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1421334_14	PHROG	phrog_28918	NA	unknown function
UHGV-1421334_14	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-1421334_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1421334_15	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1421334_15	eggNOG-mapper	1173135.I4DSI5_9CAUD	endonuclease activity	NA
UHGV-1421334_15	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1421334_15	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-1421334_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1421334_16	eggNOG-mapper	913865.DOT_2893	tape measure	NA
UHGV-1421334_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1421334_16	Structural annotation	PF06791	NA	NA
UHGV-1421334_19	PHROG	phrog_885	major tail protein	tail
UHGV-1421334_19	eggNOG-mapper	561177.ANHYDRO_01415	NA	NA
UHGV-1421334_19	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1421334_20	Structural annotation	PF11367	NA	NA
UHGV-1421334_21	PHROG	phrog_17977	NA	unknown function
UHGV-1421334_21	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-1421334_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1421334_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1421334_23	PHROG	phrog_29	major head protein	head and packaging
UHGV-1421334_23	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-1421334_23	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-1421334_23	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1421334_23	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1421334_23	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-1421334_24	PHROG	phrog_909	major head protein	head and packaging
UHGV-1421334_24	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-1421334_24	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-1421334_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1421334_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1421334_25	Structural annotation	PF06810	NA	NA
UHGV-1421334_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1421334_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1421334_26	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1421334_27	PHROG	phrog_859	portal protein	head and packaging
UHGV-1421334_27	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-1421334_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1421334_27	COG	COG2369	NA	NA
UHGV-1421334_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1421334_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1421334_29	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-1421334_29	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1421334_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1421334_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1421334_30	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1421334_30	UniRef90	UniRef90_K1TUM3	Terminase large subunit (Fragment)	NA
UHGV-1421334_30	eggNOG-mapper	673839.D2J053_9CAUD	NA	NA
UHGV-1421334_30	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-1421334_32	PHROG	phrog_3193	NA	unknown function
UHGV-1421334_32	UniRef90	UniRef90_A0A2I0N2L6	ASCH domain-containing protein	NA
UHGV-1421334_32	eggNOG-mapper	1140002.I570_04513	ASCH domain	NA
UHGV-1421334_32	Pfam	PF04266	ASCH domain	ASCH
UHGV-1421334_32	Structural annotation	PF07370, MF_00684, NF003443, COG4293	NA	NA
UHGV-1421334_33	PHROG	phrog_9353	NA	unknown function
UHGV-1421334_33	UniRef90	UniRef90_A0A4P5P3Z7	ParB domain-containing protein	NA
UHGV-1421334_33	eggNOG-mapper	1231336.L248_2139	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1421334_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1421334_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1421334_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1421334_33	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-1421334_34	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1421334_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1421334_34	UniRef90	UniRef90_A0A7L5UGI0	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1421334_34	eggNOG-mapper	557436.Lreu_0829	sulfate reduction	NA
UHGV-1421334_34	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1421334_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1421334_34	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-1421334_36	PHROG	phrog_21498	NA	unknown function
UHGV-1421334_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1421334_37	PHROG	phrog_21498	NA	unknown function
UHGV-1421334_37	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-1421334_37	eggNOG-mapper	865938.Weevi_0265	DNA binding	NA
UHGV-1421334_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1421334_38	PHROG	phrog_25027	NA	unknown function
UHGV-1421334_38	UniRef90	UniRef90_K1SIJ4	ArdcN domain-containing protein	NA
UHGV-1421334_38	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-1421334_38	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-1421334_40	Structural annotation	PF10723, NF008671, COG4226	NA	NA
UHGV-1421334_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1421334_43	UniRef90	UniRef90_UPI001D08678F	NA	NA
UHGV-1421334_43	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-1421334_43	Structural annotation	PF04545, MF_00674, NF001072, COG1342	NA	NA
UHGV-1421334_45	PHROG	phrog_824	NA	unknown function
UHGV-1421334_45	UniRef90	UniRef90_K1REM0	VRR-NUC domain protein	NA
UHGV-1421334_45	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-1421334_45	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1421334_49	PHROG	phrog_5070	NA	unknown function
UHGV-1421334_49	UniRef90	UniRef90_B0PAM0	Bacterial transferase hexapeptide repeat protein	NA
UHGV-1421334_49	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-1421334_49	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1421334_49	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-1421334_50	Structural annotation	PF06257, NF011227	NA	NA
UHGV-1421334_51	Pfam	PF04448	NA	DUF551
UHGV-1421334_51	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1421334_52	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1421334_52	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1421334_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1421334_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1421334_53	UniRef90	UniRef90_K1RYG5	Prophage antirepressor	NA
UHGV-1421334_53	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-1421334_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1421334_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1421334_53	COG	COG3617	Prophage antirepressor	NA
UHGV-1421334_53	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1421334_54	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1421334_54	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1421334_54	UniRef90	UniRef90_K1UYR3	Replicative DNA helicase (Fragment)	NA
UHGV-1421334_54	eggNOG-mapper	395494.Galf_2031	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-1421334_54	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1421334_54	COG	COG0305	Replicative DNA helicase	NA
UHGV-1421334_54	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1421334_55	UniRef90	UniRef90_K1TUR1	NA	NA
UHGV-1421334_55	Structural annotation	PF19808, COG3935	NA	NA