UHGV-1421478

Genome information

Genome length 24,289 bps

CDS count 33

Completeness 99.31% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-1421478
vOTU ID	vOTU-010674
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0177461
BioSample	SAMN06110233
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.85
Jumbo phage	No

Genome content
Genome length	24,289 bps
GC content	39.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	91.20%
Average CDS length	674.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1421478_1	KOfam	K14059	int; integrase	NA
UHGV-1421478_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1421478_1	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-1421478_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-1421478_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1421478_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1421478_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1421478_2	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-1421478_3	PHROG	phrog_1914	NA	unknown function
UHGV-1421478_3	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1421478_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1421478_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1421478_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1421478_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1421478_4	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-1421478_4	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-1421478_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1421478_4	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-1421478_5	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-1421478_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1421478_5	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-1421478_6	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-1421478_6	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-1421478_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1421478_6	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1421478_6	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1421478_6	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-1421478_9	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1421478_9	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1421478_9	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-1421478_9	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-1421478_9	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1421478_9	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1421478_9	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-1421478_9	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1421478_10	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1421478_10	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1421478_10	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-1421478_10	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-1421478_10	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1421478_10	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1421478_10	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1421478_10	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-1421478_11	PHROG	phrog_24518	NA	unknown function
UHGV-1421478_11	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-1421478_12	PHROG	phrog_824	NA	unknown function
UHGV-1421478_12	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-1421478_12	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1421478_12	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1421478_12	Structural annotation	PF08774	NA	NA
UHGV-1421478_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1421478_15	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-1421478_15	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1421478_16	PHROG	phrog_31049	NA	unknown function
UHGV-1421478_16	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-1421478_16	Structural annotation	TIGR01636	NA	NA
UHGV-1421478_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1421478_17	UniRef90	UniRef90_A0A373XNZ9	HNH endonuclease	NA
UHGV-1421478_17	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-1421478_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1421478_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1421478_18	PHROG	phrog_1066	NA	unknown function
UHGV-1421478_18	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-1421478_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1421478_19	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-1421478_19	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-1421478_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1421478_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1421478_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1421478_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1421478_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1421478_20	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-1421478_20	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-1421478_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1421478_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1421478_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1421478_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1421478_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1421478_21	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1421478_21	eggNOG-mapper	1396.DJ87_978	Clp protease	NA
UHGV-1421478_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1421478_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1421478_21	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1421478_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1421478_22	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-1421478_22	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-1421478_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1421478_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1421478_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1421478_23	PHROG	phrog_5223	neck protein	connector
UHGV-1421478_23	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-1421478_23	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-1421478_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1421478_24	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-1421478_24	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-1421478_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1421478_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1421478_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1421478_25	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-1421478_25	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-1421478_25	Structural annotation	TIGR01725	NA	NA
UHGV-1421478_26	Structural annotation	PF12691	NA	NA
UHGV-1421478_27	PHROG	phrog_885	major tail protein	tail
UHGV-1421478_27	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-1421478_27	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-1421478_27	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1421478_28	PHROG	phrog_1021	NA	unknown function
UHGV-1421478_30	PHROG	phrog_23464	NA	unknown function
UHGV-1421478_30	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1421478_30	COG	COG5283	Phage-related tail protein	NA
UHGV-1421478_30	Structural annotation	COG3941	NA	NA
UHGV-1421478_31	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-1421478_31	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-1421478_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-1421478_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1421478_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1421478_32	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-1421478_32	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1421478_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1421478_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1421478_32	COG	COG4926	Phage-related protein	NA
UHGV-1421478_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1421478_33	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-1421478_33	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1421478_33	Structural annotation	PF10651, NF040788	NA	NA