UHGV-1421601

Genome information

Genome length 33,106 bps

CDS count 58

Completeness 95.90% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-1421601
vOTU ID	vOTU-012987
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0228932
BioSample	SAMEA2737825
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.82
Jumbo phage	No

Genome content
Genome length	33,106 bps
GC content	36.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	96.54%
Average CDS length	554.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1421601_1	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1421601_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1421601_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1421601_3	UniRef90	UniRef90_R6FJ83	Single-stranded DNA-binding protein	NA
UHGV-1421601_3	eggNOG-mapper	411463.EUBVEN_00539	Single-stranded DNA-binding protein	NA
UHGV-1421601_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1421601_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1421601_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1421601_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1421601_3	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1421601_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1421601_4	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-1421601_4	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1421601_4	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1421601_5	PHROG	phrog_7566	NA	unknown function
UHGV-1421601_5	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-1421601_5	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-1421601_6	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1421601_6	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1421601_6	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-1421601_6	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1421601_6	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1421601_6	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1421601_7	PHROG	phrog_1123	NA	unknown function
UHGV-1421601_7	UniRef90	UniRef90_UPI0012E37870	DNA gyrase	NA
UHGV-1421601_7	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-1421601_7	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-1421601_8	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1421601_8	UniRef90	UniRef90_A0A173W897	Phage replisome organizer, putative, N-terminal region	NA
UHGV-1421601_8	eggNOG-mapper	702450.CUW_0518	Phage replisome organizer N-terminal	NA
UHGV-1421601_8	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1421601_8	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1421601_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1421601_8	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-1421601_9	PHROG	phrog_5070	NA	unknown function
UHGV-1421601_9	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-1421601_9	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1421601_9	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1421601_9	Structural annotation	NF040481	NA	NA
UHGV-1421601_13	PHROG	phrog_21026	NA	unknown function
UHGV-1421601_15	COG	COG1592	Rubrerythrin	NA
UHGV-1421601_18	PHROG	phrog_20593	NA	unknown function
UHGV-1421601_19	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1421601_19	UniRef90	UniRef90_A0A413RZZ9	Class I SAM-dependent methyltransferase	NA
UHGV-1421601_19	eggNOG-mapper	469604.HMPREF0946_01120	methyltransferase	NA
UHGV-1421601_19	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1421601_19	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1421601_19	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1421601_19	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-1421601_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1421601_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1421601_21	UniRef90	UniRef90_A0A1Q6RQM1	IstB_IS21 domain-containing protein	NA
UHGV-1421601_21	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-1421601_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1421601_21	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1421601_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1421601_21	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1421601_29	KOfam	K07273	acm; lysozyme	NA
UHGV-1421601_29	PHROG	phrog_291	endolysin	lysis
UHGV-1421601_29	UniRef90	UniRef90_UPI0008713C11	peptidoglycan-binding protein	NA
UHGV-1421601_29	eggNOG-mapper	1120978.KB894083_gene891	Pfam:Cpl-7	NA
UHGV-1421601_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1421601_29	Pfam	PF01476	LysM domain	LysM
UHGV-1421601_29	COG	COG1388	LysM repeat	NA
UHGV-1421601_29	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-1421601_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1421601_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1421601_30	UniRef90	UniRef90_I2E873	HNHc domain-containing protein (Fragment)	NA
UHGV-1421601_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1421601_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1421601_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1421601_31	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1421601_31	UniRef90	UniRef90_UPI001782D995	DNA modification methylase	NA
UHGV-1421601_31	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-1421601_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1421601_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1421601_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1421601_31	COG	COG0863	DNA modification methylase	NA
UHGV-1421601_31	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1421601_32	eggNOG-mapper	697281.Mahau_2831	NA	NA
UHGV-1421601_32	AcrCatalog	cluster_6712	NA	NA
UHGV-1421601_33	PHROG	phrog_13845	NA	unknown function
UHGV-1421601_33	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-1421601_33	Structural annotation	PF05119, COG3747	NA	NA
UHGV-1421601_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1421601_34	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-1421601_34	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-1421601_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1421601_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1421601_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1421601_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-1421601_35	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-1421601_35	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-1421601_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1421601_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1421601_35	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1421601_36	KOfam	K06904	NA	NA
UHGV-1421601_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1421601_36	UniRef90	UniRef90_U3PIW1	Putative ClpP protease	NA
UHGV-1421601_36	eggNOG-mapper	508419.F8J161_9CAUD	peptidase activity	NA
UHGV-1421601_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1421601_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1421601_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1421601_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-1421601_37	UniRef90	UniRef90_A0A075KK19	Putative major head protein	NA
UHGV-1421601_37	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-1421601_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1421601_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1421601_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1421601_38	PHROG	phrog_6865	NA	unknown function
UHGV-1421601_38	eggNOG-mapper	1399942.U3PBG9_9CAUD	NA	NA
UHGV-1421601_38	Structural annotation	PF01281	NA	NA
UHGV-1421601_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1421601_39	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-1421601_39	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-1421601_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1421601_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1421601_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-1421601_40	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-1421601_40	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-1421601_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1421601_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1421601_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1421601_41	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-1421601_41	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-1421601_41	Structural annotation	TIGR01725	NA	NA
UHGV-1421601_42	PHROG	phrog_78	tail terminator	connector
UHGV-1421601_42	UniRef90	UniRef90_UPI0003697F12	NA	NA
UHGV-1421601_42	eggNOG-mapper	1399942.U3PDS3_9CAUD	NA	NA
UHGV-1421601_42	Structural annotation	PF05657	NA	NA
UHGV-1421601_43	PHROG	phrog_88	major tail protein	tail
UHGV-1421601_43	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-1421601_43	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-1421601_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1421601_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1421601_44	PHROG	phrog_2115	tail protein	tail
UHGV-1421601_44	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-1421601_44	Structural annotation	PF11836	NA	NA
UHGV-1421601_46	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-1421601_46	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1421601_46	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-1421601_46	COG	COG5283	Phage-related tail protein	NA
UHGV-1421601_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1421601_47	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-1421601_47	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-1421601_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1421601_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1421601_47	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1421601_48	PHROG	phrog_1084	NA	unknown function
UHGV-1421601_48	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-1421601_48	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-1421601_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1421601_50	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-1421601_50	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-1421601_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1421601_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1421601_50	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-1421601_51	PHROG	phrog_4105	NA	unknown function
UHGV-1421601_51	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1421601_51	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-1421601_52	KOfam	K03196	virB11, lvhB11; type IV secretion system protein VirB11 [EC:7.4.2.8]	NA
UHGV-1421601_52	UniRef90	UniRef90_A0A373LI47	T2SP_E domain-containing protein	NA
UHGV-1421601_52	eggNOG-mapper	411463.EUBVEN_02225	COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis	NA
UHGV-1421601_52	Pfam	PF00437	Type II/IV secretion system protein	T2SSE
UHGV-1421601_52	COG	COG0630	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI	NA
UHGV-1421601_53	UniRef90	UniRef90_A0A173U6Q7	Flp pilus assembly protein TadB	NA
UHGV-1421601_53	eggNOG-mapper	411463.EUBVEN_02226	NA	NA
UHGV-1421601_56	UniRef90	UniRef90_G9R6E9	NA	NA
UHGV-1421601_56	eggNOG-mapper	411463.EUBVEN_02227	NA	NA
UHGV-1421601_57	eggNOG-mapper	411463.EUBVEN_02228	NA	NA
UHGV-1421601_58	KOfam	K07279	yfaL; autotransporter family porin	NA
UHGV-1421601_58	eggNOG-mapper	411463.EUBVEN_02230	domain, Protein	NA
UHGV-1421601_58	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA