UHGV-1421618

Genome information

Genome length 23,108 bps

CDS count 39

Completeness 62.29% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1421618
vOTU ID	vOTU-034762
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0169360
BioSample	SAMEA2148412
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.25
Jumbo phage	No

Genome content
Genome length	23,108 bps
GC content	56.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.20%
Average CDS length	562.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1421618_1	PHROG	phrog_21718	NA	unknown function
UHGV-1421618_1	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1421618_2	PHROG	phrog_3754	NA	unknown function
UHGV-1421618_2	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1421618_3	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-1421618_4	PHROG	phrog_1129	holin	lysis
UHGV-1421618_4	UniRef90	UniRef90_A0A3R8INC9	Enolase	NA
UHGV-1421618_4	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1421618_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1421618_4	Structural annotation	PF06946	NA	NA
UHGV-1421618_5	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-1421618_6	KOfam	K07273	acm; lysozyme	NA
UHGV-1421618_6	PHROG	phrog_291	endolysin	lysis
UHGV-1421618_6	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-1421618_6	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-1421618_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1421618_6	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1421618_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1421618_6	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1421618_8	PHROG	phrog_9534	head protein	head and packaging
UHGV-1421618_8	eggNOG-mapper	411470.RUMGNA_02079	COG NOG18825 non supervised orthologous group	NA
UHGV-1421618_8	Structural annotation	PF20747	NA	NA
UHGV-1421618_9	PHROG	phrog_538	minor tail protein	tail
UHGV-1421618_9	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1421618_9	eggNOG-mapper	931626.Awo_c30930	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1421618_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1421618_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1421618_10	PHROG	phrog_36410	NA	unknown function
UHGV-1421618_10	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-1421618_10	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-1421618_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1421618_11	PHROG	phrog_23464	NA	unknown function
UHGV-1421618_11	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1421618_11	COG	COG5283	Phage-related tail protein	NA
UHGV-1421618_11	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-1421618_13	PHROG	phrog_885	major tail protein	tail
UHGV-1421618_13	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1421618_13	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1421618_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1421618_14	Structural annotation	PF11367	NA	NA
UHGV-1421618_15	PHROG	phrog_17977	NA	unknown function
UHGV-1421618_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1421618_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1421618_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1421618_17	PHROG	phrog_267	major head protein	head and packaging
UHGV-1421618_17	UniRef90	UniRef90_A0A3Q9B9E4	P22 coat protein-protein 5 domain protein	NA
UHGV-1421618_17	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-1421618_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1421618_18	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1421618_18	Structural annotation	PF06810	NA	NA
UHGV-1421618_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1421618_19	UniRef90	UniRef90_UPI000691EB78	HK97 gp10 family phage protein	NA
UHGV-1421618_19	eggNOG-mapper	683837.lse_1605	NA	NA
UHGV-1421618_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1421618_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1421618_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1421618_21	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1421618_21	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-1421618_21	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1421618_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1421618_21	COG	COG2369	NA	NA
UHGV-1421618_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1421618_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1421618_22	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1421618_22	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1421618_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1421618_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1421618_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1421618_23	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-1421618_23	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-1421618_23	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-1421618_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1421618_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1421618_24	UniRef90	UniRef90_A0A1I5G7W6	Phage terminase small subunit	NA
UHGV-1421618_24	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-1421618_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1421618_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1421618_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1421618_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1421618_25	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-1421618_25	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-1421618_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1421618_31	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1421618_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1421618_31	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1421618_31	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1421618_31	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1421618_31	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1421618_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1421618_31	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1421618_36	PHROG	phrog_10714	NA	unknown function
UHGV-1421618_37	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1421618_37	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-1421618_37	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-1421618_37	Structural annotation	PF17375	NA	NA
UHGV-1421618_38	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1421618_38	UniRef90	UniRef90_UPI001F1BE169	Holliday junction endonuclease	NA
UHGV-1421618_38	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1421618_38	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1421618_38	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA