UHGV-1421774

Genome information

Genome length 20,892 bps

CDS count 25

Completeness 51.87% (medium-quality)

geNomad score 0.9645

Prediction confidence Confident

Genome information
Genome ID	UHGV-1421774
vOTU ID	vOTU-024244
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0152992
BioSample	SAMD00036354
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9645
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.1
Jumbo phage	No

Genome content
Genome length	20,892 bps
GC content	36.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	91.53%
Average CDS length	767.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1421774_1	PHROG	phrog_10054	NA	unknown function
UHGV-1421774_1	UniRef90	UniRef90_UPI000AD5FF5C	BppU family phage baseplate upper protein	NA
UHGV-1421774_1	eggNOG-mapper	1104325.M7W_1369	InterPro IPR018913 Domain of	NA
UHGV-1421774_2	PHROG	phrog_6758	NA	unknown function
UHGV-1421774_2	eggNOG-mapper	1104325.M7W_1368	NA	NA
UHGV-1421774_3	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-1421774_3	UniRef90	UniRef90_UPI00189A61D2	phage tail protein	NA
UHGV-1421774_3	eggNOG-mapper	1104325.M7W_1367	Prophage endopeptidase tail	NA
UHGV-1421774_3	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1421774_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1421774_3	COG	COG4926	Phage-related protein	NA
UHGV-1421774_3	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1421774_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1421774_4	UniRef90	UniRef90_S4FH66	Phage tail component protein	NA
UHGV-1421774_4	eggNOG-mapper	1104325.M7W_1366	Phage tail protein	NA
UHGV-1421774_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1421774_4	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1421774_5	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1421774_5	UniRef90	UniRef90_A0A2G0EAS2	Capsid protein	NA
UHGV-1421774_5	eggNOG-mapper	1104325.M7W_1365	Transglycosylase SLT domain	NA
UHGV-1421774_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1421774_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1421774_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1421774_5	Structural annotation	PF20155, PF18013, TIGR01760, COG3941, COG3953	NA	NA
UHGV-1421774_6	PHROG	phrog_706	NA	unknown function
UHGV-1421774_6	UniRef90	UniRef90_C9AN02	Bacteriophage Gp15 protein	NA
UHGV-1421774_6	eggNOG-mapper	1104325.M7W_1364	Bacteriophage Gp15 protein	NA
UHGV-1421774_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1421774_6	Structural annotation	PF06854	NA	NA
UHGV-1421774_7	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-1421774_7	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-1421774_7	eggNOG-mapper	1104325.M7W_1363	NA	NA
UHGV-1421774_7	Structural annotation	PF10666	NA	NA
UHGV-1421774_8	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1421774_8	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1421774_8	UniRef90	UniRef90_C9AN00	Phage tail protein	NA
UHGV-1421774_8	eggNOG-mapper	1140001.I571_02116	domain, Protein	NA
UHGV-1421774_8	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1421774_8	COG	COG5492	NA	NA
UHGV-1421774_8	Structural annotation	PF02368	NA	NA
UHGV-1421774_9	PHROG	phrog_820	major tail protein	tail
UHGV-1421774_9	UniRef90	UniRef90_A0A7Y6QFQ3	Capsid protein	NA
UHGV-1421774_9	eggNOG-mapper	1104325.M7W_1362	domain, Protein	NA
UHGV-1421774_9	COG	COG5492	NA	NA
UHGV-1421774_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1421774_10	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1421774_10	UniRef90	UniRef90_UPI0018A2E21A	capsid protein	NA
UHGV-1421774_10	eggNOG-mapper	1140001.I571_02114	Minor capsid protein from bacteriophage	NA
UHGV-1421774_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1421774_10	Structural annotation	PF12691	NA	NA
UHGV-1421774_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1421774_11	UniRef90	UniRef90_A0A345FQJ7	Capsid protein	NA
UHGV-1421774_11	eggNOG-mapper	1158601.I585_00692	Minor capsid protein	NA
UHGV-1421774_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1421774_11	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1421774_12	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1421774_12	UniRef90	UniRef90_UPI00090013CF	putative minor capsid protein	NA
UHGV-1421774_12	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-1421774_12	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1421774_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1421774_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1421774_13	UniRef90	UniRef90_A0A0B8QYX3	Coenzyme F420-reducing hydrogenase, beta subunit	NA
UHGV-1421774_13	eggNOG-mapper	1140001.I571_02111	NA	NA
UHGV-1421774_14	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1421774_14	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1421774_14	UniRef90	UniRef90_A0A2G0EAS3	BIG2 domain-containing protein	NA
UHGV-1421774_14	eggNOG-mapper	1140001.I571_01157	domain, Protein	NA
UHGV-1421774_14	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1421774_14	COG	COG5492	NA	NA
UHGV-1421774_14	Structural annotation	PF02368	NA	NA
UHGV-1421774_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-1421774_15	UniRef90	UniRef90_A0A829A4D2	BIG2 domain-containing protein	NA
UHGV-1421774_15	eggNOG-mapper	1158614.I592_01121	NA	NA
UHGV-1421774_15	Structural annotation	PF20911	NA	NA
UHGV-1421774_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1421774_16	UniRef90	UniRef90_S4E2G7	Phage minor structural protein GP20	NA
UHGV-1421774_16	eggNOG-mapper	1158614.I592_01120	Phage minor structural protein GP20	NA
UHGV-1421774_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1421774_16	Structural annotation	PF06810	NA	NA
UHGV-1421774_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1421774_17	UniRef90	UniRef90_S4EI20	Phage minor capsid protein 2	NA
UHGV-1421774_17	eggNOG-mapper	1140001.I571_02107	Phage minor capsid protein 2	NA
UHGV-1421774_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1421774_17	Structural annotation	PF06152	NA	NA
UHGV-1421774_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-1421774_18	UniRef90	UniRef90_A0A2G0EAN2	Capsid protein	NA
UHGV-1421774_18	eggNOG-mapper	1104325.M7W_1352	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1421774_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1421774_18	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1421774_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1421774_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1421774_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1421774_19	UniRef90	UniRef90_S4EAE9	Phage terminase, large subunit, PBSX family	NA
UHGV-1421774_19	eggNOG-mapper	1104325.M7W_1351	Terminase RNAseH like domain	NA
UHGV-1421774_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1421774_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1421774_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1421774_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-1421774_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1421774_20	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1421774_20	UniRef90	UniRef90_UPI00196B2C2C	phage terminase small subunit	NA
UHGV-1421774_20	eggNOG-mapper	1140001.I571_02104	DNA packaging	NA
UHGV-1421774_20	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1421774_20	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1421774_20	COG	COG5484	NA	NA
UHGV-1421774_20	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1421774_21	PHROG	phrog_1202	NA	unknown function
UHGV-1421774_21	UniRef90	UniRef90_C9APX8	Predicted protein	NA
UHGV-1421774_21	eggNOG-mapper	1140001.I571_01149	NA	NA
UHGV-1421774_21	Structural annotation	PF18789	NA	NA
UHGV-1421774_22	PHROG	phrog_1090	NA	unknown function
UHGV-1421774_22	eggNOG-mapper	565664.EFXG_02842	NA	NA
UHGV-1421774_22	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-1421774_23	PHROG	phrog_10973	NA	unknown function
UHGV-1421774_24	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1421774_24	UniRef90	UniRef90_I6T7S9	ArpU family transcriptional regulator	NA
UHGV-1421774_24	eggNOG-mapper	768486.EHR_09840	NA	NA
UHGV-1421774_24	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-1421774_25	PHROG	phrog_3302	NA	unknown function
UHGV-1421774_25	UniRef90	UniRef90_C9AMY2	ArpT	NA
UHGV-1421774_25	eggNOG-mapper	1140001.I571_01143	NA	NA
UHGV-1421774_25	Structural annotation	PF09953, MF_00906, NF000331, COG4873	NA	NA