UHGV-1422192

Genome information

Genome length 34,017 bps

CDS count 57

Completeness 98.30% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-1422192
vOTU ID	vOTU-063617
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0233545
BioSample	SAMEA2784453
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.30% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.59
Jumbo phage	No

Genome content
Genome length	34,017 bps
GC content	43.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.96%
Average CDS length	558.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1422192_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1422192_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-1422192_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1422192_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1422192_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1422192_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1422192_2	UniRef90	UniRef90_A0A1Y4R6J8	Terminase	NA
UHGV-1422192_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1422192_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1422192_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1422192_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1422192_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1422192_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1422192_3	UniRef90	UniRef90_A0A1Y4R7B9	Phage portal protein	NA
UHGV-1422192_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-1422192_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1422192_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1422192_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1422192_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1422192_4	KOfam	K06904	NA	NA
UHGV-1422192_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1422192_4	UniRef90	UniRef90_UPI0008716C68	HK97 family phage prohead protease	NA
UHGV-1422192_4	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-1422192_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1422192_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1422192_4	COG	COG3740	Phage head maturation protease	NA
UHGV-1422192_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1422192_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1422192_5	UniRef90	UniRef90_A0A1C6CI17	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1422192_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-1422192_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1422192_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1422192_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1422192_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1422192_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1422192_6	PHROG	phrog_2550	NA	unknown function
UHGV-1422192_6	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-1422192_6	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-1422192_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1422192_7	PHROG	phrog_19734	NA	unknown function
UHGV-1422192_7	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-1422192_7	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-1422192_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1422192_8	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-1422192_8	Structural annotation	PF05657	NA	NA
UHGV-1422192_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1422192_9	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-1422192_9	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-1422192_9	Structural annotation	TIGR01725	NA	NA
UHGV-1422192_10	PHROG	phrog_88	major tail protein	tail
UHGV-1422192_10	UniRef90	UniRef90_A0A3D1FL93	Phage tail protein	NA
UHGV-1422192_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1422192_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1422192_10	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-1422192_11	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-1422192_11	Structural annotation	PF11836	NA	NA
UHGV-1422192_13	PHROG	phrog_23464	NA	unknown function
UHGV-1422192_13	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-1422192_13	COG	COG5412	Phage-related protein	NA
UHGV-1422192_13	Structural annotation	PF20155, COG5280	NA	NA
UHGV-1422192_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1422192_14	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-1422192_14	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-1422192_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1422192_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-1422192_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1422192_15	PHROG	phrog_13289	tail protein	tail
UHGV-1422192_15	UniRef90	UniRef90_A0A350V7A9	Prophage_tail domain-containing protein	NA
UHGV-1422192_15	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1422192_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1422192_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1422192_15	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1422192_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1422192_16	KOfam	K24214	OTOL1; otolin-1	NA
UHGV-1422192_16	PHROG	phrog_366	tail fiber protein	tail
UHGV-1422192_16	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-1422192_16	eggNOG-mapper	33035.JPJF01000023_gene3228	NA	NA
UHGV-1422192_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1422192_17	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1422192_17	PHROG	phrog_819	tail protein	tail
UHGV-1422192_17	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1422192_20	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-1422192_21	UniRef90	UniRef90_A0A6N9QJ47	SH3b domain-containing protein	NA
UHGV-1422192_21	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-1422192_21	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1422192_21	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-1422192_21	Structural annotation	PF03412, PF18342, NF033920, NF041850, COG3271, COG4991	NA	NA
UHGV-1422192_22	PHROG	phrog_918	NA	unknown function
UHGV-1422192_22	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-1422192_22	eggNOG-mapper	888055.HMPREF9015_01979	NA	NA
UHGV-1422192_22	Pfam	PF19791	NA	DUF6275
UHGV-1422192_22	Structural annotation	PF19791	NA	NA
UHGV-1422192_23	PHROG	phrog_443	holin	lysis
UHGV-1422192_23	UniRef90	UniRef90_UPI001F4B569B	holin	NA
UHGV-1422192_23	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1422192_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1422192_26	UniRef90	UniRef90_U2CXQ8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-1422192_26	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1422192_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1422192_26	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1422192_27	PHROG	phrog_18108	NA	unknown function
UHGV-1422192_27	UniRef90	UniRef90_M6U9G0	HARP domain-containing protein	NA
UHGV-1422192_27	Structural annotation	PF07443	NA	NA
UHGV-1422192_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1422192_30	PHROG	phrog_95	integrase	integration and excision
UHGV-1422192_30	UniRef90	UniRef90_UPI0007748959	recombinase family protein	NA
UHGV-1422192_30	eggNOG-mapper	1235792.C808_00650	Resolvase, N terminal domain	NA
UHGV-1422192_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1422192_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1422192_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1422192_30	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1422192_31	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1422192_31	UniRef90	UniRef90_A0A414J7V0	BIG2 domain-containing protein	NA
UHGV-1422192_31	eggNOG-mapper	1280664.AUIX01000048_gene2863	Bacterial Ig-like domain (group 2)	NA
UHGV-1422192_31	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1422192_31	Structural annotation	PF02368, NF041740	NA	NA
UHGV-1422192_32	PHROG	phrog_87	metallo-protease	other
UHGV-1422192_32	UniRef90	UniRef90_A0A1M6TSV0	Peptidase_M78 domain-containing protein	NA
UHGV-1422192_32	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-1422192_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1422192_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1422192_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1422192_33	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1422192_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1422192_33	UniRef90	UniRef90_R6WN44	HTH cro/C1-type domain-containing protein	NA
UHGV-1422192_33	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1422192_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1422192_33	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1422192_34	UniRef90	UniRef90_UPI0011C48861	XRE family transcriptional regulator	NA
UHGV-1422192_34	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-1422192_38	PHROG	phrog_16731	NA	unknown function
UHGV-1422192_38	UniRef90	UniRef90_E6UJH1	Transposase IS4 family protein	NA
UHGV-1422192_38	eggNOG-mapper	1384065.JAGS01000001_gene1091	Transposase DDE domain	NA
UHGV-1422192_38	Pfam	PF13808	DDE_Tnp_1-associated	DDE_Tnp_1_assoc
UHGV-1422192_38	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-1422192_38	NCBIFam	NF033564.0	ISAs1 family transposase	NA
UHGV-1422192_38	COG	COG5433	Predicted transposase YbfD/YdcC associated with H repeats	NA
UHGV-1422192_39	PHROG	phrog_2113	NA	unknown function
UHGV-1422192_39	Pfam	PF08279	HTH domain	HTH_11
UHGV-1422192_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1422192_41	UniRef90	UniRef90_A0A1C5T8N6	ERF superfamily	NA
UHGV-1422192_41	eggNOG-mapper	762982.HMPREF9442_00551	Erf family	NA
UHGV-1422192_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-1422192_41	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1422192_42	PHROG	phrog_7566	NA	unknown function
UHGV-1422192_42	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-1422192_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1422192_43	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-1422192_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1422192_45	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1422192_45	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-1422192_45	eggNOG-mapper	97139.C824_02821	NA	NA
UHGV-1422192_45	Structural annotation	PF12793, NF033788, COG0640	NA	NA
UHGV-1422192_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1422192_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1422192_46	UniRef90	UniRef90_A0A1C6JYC1	Replicative DNA helicase	NA
UHGV-1422192_46	eggNOG-mapper	697281.Mahau_0555	DnaB-like helicase N terminal domain	NA
UHGV-1422192_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1422192_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-1422192_46	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1422192_48	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1422192_48	eggNOG-mapper	1415774.U728_1686	NA	NA
UHGV-1422192_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1422192_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1422192_49	UniRef90	UniRef90_A0A858BV28	Single-stranded DNA-binding protein	NA
UHGV-1422192_49	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1422192_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1422192_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1422192_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1422192_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1422192_49	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1422192_50	PHROG	phrog_28936	NA	unknown function
UHGV-1422192_50	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-1422192_50	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-1422192_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1422192_53	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1422192_53	UniRef90	UniRef90_UPI00131A3D1F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1422192_53	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-1422192_53	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1422192_56	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1422192_56	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1422192_56	UniRef90	UniRef90_A0A4Q7PLB0	Cytosine-specific methyltransferase	NA
UHGV-1422192_56	eggNOG-mapper	1321782.HMPREF1986_00325	C-5 cytosine-specific DNA methylase	NA
UHGV-1422192_56	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1422192_56	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1422192_56	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1422192_56	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1422192_56	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA