UHGV-1422312

Genome information

Genome length 23,093 bps

CDS count 38

Completeness 56.55% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1422312
vOTU ID	vOTU-030622
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0169262
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.32
Jumbo phage	No

Genome content
Genome length	23,093 bps
GC content	51.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	94.54%
Average CDS length	577.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1422312_2	PHROG	phrog_9534	head protein	head and packaging
UHGV-1422312_2	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-1422312_2	Structural annotation	PF18463, PF20747	NA	NA
UHGV-1422312_3	PHROG	phrog_538	minor tail protein	tail
UHGV-1422312_3	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1422312_3	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-1422312_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1422312_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1422312_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1422312_4	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-1422312_4	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-1422312_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-1422312_4	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1422312_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1422312_5	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-1422312_5	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1422312_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1422312_5	Structural annotation	PF20155	NA	NA
UHGV-1422312_7	PHROG	phrog_18646	NA	unknown function
UHGV-1422312_8	PHROG	phrog_885	major tail protein	tail
UHGV-1422312_8	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1422312_8	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1422312_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1422312_9	Structural annotation	PF11367	NA	NA
UHGV-1422312_10	PHROG	phrog_17977	NA	unknown function
UHGV-1422312_10	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1422312_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1422312_13	PHROG	phrog_544	major head protein	head and packaging
UHGV-1422312_13	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1422312_13	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1422312_13	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1422312_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1422312_14	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1422312_14	Structural annotation	PF06810	NA	NA
UHGV-1422312_15	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1422312_15	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-1422312_15	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1422312_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1422312_16	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-1422312_16	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1422312_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1422312_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1422312_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1422312_17	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1422312_17	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-1422312_17	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1422312_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1422312_17	COG	COG2369	NA	NA
UHGV-1422312_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1422312_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-1422312_18	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1422312_18	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1422312_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1422312_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1422312_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1422312_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1422312_19	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-1422312_19	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-1422312_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1422312_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1422312_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1422312_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-1422312_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1422312_20	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1422312_20	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-1422312_20	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1422312_20	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1422312_20	Structural annotation	PF16677	NA	NA
UHGV-1422312_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1422312_21	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-1422312_21	Pfam	PF07374	NA	DUF1492
UHGV-1422312_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1422312_21	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-1422312_23	PHROG	phrog_9958	NA	unknown function
UHGV-1422312_23	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-1422312_23	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-1422312_23	Structural annotation	PF19789	NA	NA
UHGV-1422312_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1422312_27	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1422312_27	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1422312_27	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1422312_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1422312_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1422312_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1422312_28	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1422312_28	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-1422312_28	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1422312_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1422312_28	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1422312_29	Structural annotation	PF11417	NA	NA
UHGV-1422312_30	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1422312_30	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1422312_30	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-1422312_30	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-1422312_30	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1422312_30	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1422312_30	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-1422312_31	PHROG	phrog_4973	NA	unknown function
UHGV-1422312_31	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-1422312_31	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-1422312_31	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1422312_31	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1422312_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1422312_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1422312_32	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-1422312_32	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-1422312_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1422312_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1422312_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1422312_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1422312_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1422312_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1422312_34	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1422312_34	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1422312_34	Structural annotation	PF05772	NA	NA
UHGV-1422312_35	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-1422312_38	PHROG	phrog_27197	NA	unknown function
UHGV-1422312_38	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-1422312_38	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1422312_38	Structural annotation	NF007410	NA	NA