UHGV-1422371

Genome information

vOTU vOTU-021926

Genome length 22,844 bps

CDS count 40

Completeness 57.54% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-1422371
vOTU ID	vOTU-021926
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0167519
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.52
Jumbo phage	No

Genome content
Genome length	22,844 bps
GC content	56.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	89.85%
Average CDS length	515.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1422371_1	PHROG	phrog_885	major tail protein	tail
UHGV-1422371_1	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1422371_1	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1422371_1	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1422371_2	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-1422371_4	PHROG	phrog_7115	NA	unknown function
UHGV-1422371_4	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-1422371_4	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-1422371_4	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1422371_4	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-1422371_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1422371_5	UniRef90	UniRef90_A0A3D1JBH2	Phage tail protein (Fragment)	NA
UHGV-1422371_5	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-1422371_5	COG	COG1511	NA	NA
UHGV-1422371_5	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1422371_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1422371_7	PHROG	phrog_13879	NA	unknown function
UHGV-1422371_7	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1422371_7	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1422371_9	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-1422371_9	PHROG	phrog_11157	NA	unknown function
UHGV-1422371_9	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-1422371_9	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-1422371_9	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1422371_9	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1422371_9	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1422371_9	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1422371_10	PHROG	phrog_18725	NA	unknown function
UHGV-1422371_10	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-1422371_10	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1422371_11	PHROG	phrog_863	tail fiber assembly	tail
UHGV-1422371_11	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1422371_11	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1422371_13	PHROG	phrog_134	NA	unknown function
UHGV-1422371_13	UniRef90	UniRef90_A0A6G3M4W0	XkdX family protein	NA
UHGV-1422371_13	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1422371_13	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1422371_13	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1422371_15	PHROG	phrog_937	hemolysin	other
UHGV-1422371_15	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1422371_16	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-1422371_16	Structural annotation	PF09992, COG4632	NA	NA
UHGV-1422371_17	PHROG	phrog_13256	NA	unknown function
UHGV-1422371_17	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-1422371_18	PHROG	phrog_21357	endolysin	lysis
UHGV-1422371_18	UniRef90	UniRef90_A0A1Y4WBP5	LysM domain-containing protein	NA
UHGV-1422371_18	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-1422371_18	COG	COG1388	LysM repeat	NA
UHGV-1422371_18	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-1422371_19	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-1422371_19	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1422371_19	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-1422371_21	PHROG	phrog_3754	NA	unknown function
UHGV-1422371_21	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1422371_22	PHROG	phrog_21718	NA	unknown function
UHGV-1422371_22	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1422371_23	PHROG	phrog_22984	NA	unknown function
UHGV-1422371_24	PHROG	phrog_16490	NA	unknown function
UHGV-1422371_24	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1422371_25	PHROG	phrog_20016	NA	unknown function
UHGV-1422371_25	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1422371_25	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1422371_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1422371_26	PHROG	phrog_28802	NA	unknown function
UHGV-1422371_27	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-1422371_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1422371_28	PHROG	phrog_95	integrase	integration and excision
UHGV-1422371_28	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-1422371_28	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1422371_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1422371_28	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1422371_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1422371_28	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1422371_29	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-1422371_29	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-1422371_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1422371_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1422371_29	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1422371_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1422371_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1422371_33	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-1422371_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1422371_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1422371_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1422371_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1422371_34	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-1422371_34	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1422371_34	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1422371_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1422371_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1422371_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1422371_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1422371_38	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1422371_38	eggNOG-mapper	693746.OBV_42640	C-5 cytosine-specific DNA methylase	NA
UHGV-1422371_38	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1422371_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1422371_38	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1422371_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1422371_39	PHROG	phrog_22529	NA	unknown function
UHGV-1422371_39	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-1422371_39	eggNOG-mapper	411461.DORFOR_01578	3D domain	NA
UHGV-1422371_39	Pfam	PF06725	3D domain	3D
UHGV-1422371_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1422371_39	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-1422371_40	PHROG	phrog_4433	NA	unknown function
UHGV-1422371_40	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-1422371_40	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1422371_40	Structural annotation	NF007410	NA	NA