UHGV-1422400

Genome information

Genome length 21,054 bps

CDS count 30

Completeness 65.43% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1422400
vOTU ID	vOTU-034777
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0154260
BioSample	SAMN02333926
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.28
Jumbo phage	No

Genome content
Genome length	21,054 bps
GC content	51.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	94.12%
Average CDS length	665.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1422400_3	Structural annotation	PF19923, NF009981, COG0355	NA	NA
UHGV-1422400_4	eggNOG-mapper	1408312.JNJS01000001_gene1338	sequence-specific DNA binding	NA
UHGV-1422400_4	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1422400_6	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-1422400_6	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1422400_6	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-1422400_7	PHROG	phrog_263	holin	lysis
UHGV-1422400_7	UniRef90	UniRef90_R6JQI4	Holin SPP1 family	NA
UHGV-1422400_7	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-1422400_7	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1422400_7	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1422400_7	Structural annotation	PF04688	NA	NA
UHGV-1422400_8	PHROG	phrog_4105	NA	unknown function
UHGV-1422400_8	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-1422400_9	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-1422400_10	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-1422400_10	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-1422400_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1422400_10	Structural annotation	PF00386, NF033147	NA	NA
UHGV-1422400_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1422400_11	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-1422400_11	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-1422400_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1422400_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1422400_11	COG	COG4926	Phage-related protein	NA
UHGV-1422400_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1422400_12	UniRef90	UniRef90_UPI0019689066	phage tail protein	NA
UHGV-1422400_12	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-1422400_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1422400_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1422400_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1422400_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1422400_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1422400_13	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-1422400_13	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-1422400_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1422400_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1422400_14	PHROG	phrog_25901	NA	unknown function
UHGV-1422400_14	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-1422400_15	PHROG	phrog_13494	NA	unknown function
UHGV-1422400_15	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-1422400_16	PHROG	phrog_88	major tail protein	tail
UHGV-1422400_16	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-1422400_16	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-1422400_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1422400_16	COG	COG5492	NA	NA
UHGV-1422400_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1422400_17	PHROG	phrog_78	tail terminator	connector
UHGV-1422400_17	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-1422400_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1422400_18	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-1422400_18	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-1422400_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1422400_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1422400_19	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-1422400_19	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-1422400_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1422400_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1422400_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1422400_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1422400_20	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-1422400_20	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-1422400_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1422400_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1422400_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1422400_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1422400_21	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-1422400_21	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1422400_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1422400_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1422400_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1422400_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1422400_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1422400_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1422400_22	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-1422400_22	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-1422400_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1422400_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1422400_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1422400_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1422400_23	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-1422400_23	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-1422400_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1422400_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1422400_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1422400_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1422400_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1422400_24	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-1422400_24	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-1422400_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1422400_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1422400_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1422400_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1422400_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1422400_25	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-1422400_25	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-1422400_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1422400_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1422400_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1422400_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1422400_26	UniRef90	UniRef90_A0A858BSQ3	HNH endonuclease	NA
UHGV-1422400_26	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-1422400_27	PHROG	phrog_1558	NA	unknown function
UHGV-1422400_27	UniRef90	UniRef90_A0A316RAK3	Sigma70_r4_2 domain-containing protein	NA
UHGV-1422400_27	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-1422400_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1422400_27	Structural annotation	PF06530, NF008895, COG1595	NA	NA