UHGV-1422508

Genome information

Genome length 23,079 bps

CDS count 33

Completeness 53.55% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1422508
vOTU ID	vOTU-034779
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0169162
BioSample	SAMN04126281
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.17
Jumbo phage	No

Genome content
Genome length	23,079 bps
GC content	34.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	91.85%
Average CDS length	645.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1422508_1	PHROG	phrog_6918	holin	lysis
UHGV-1422508_1	UniRef90	UniRef90_UPI001897547F	phage holin, LLH family	NA
UHGV-1422508_1	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1422508_1	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1422508_1	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1422508_1	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1422508_2	PHROG	phrog_17876	NA	unknown function
UHGV-1422508_2	eggNOG-mapper	537007.BLAHAN_04259	NA	NA
UHGV-1422508_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1422508_3	PHROG	phrog_20388	endolysin	lysis
UHGV-1422508_3	UniRef90	UniRef90_H7BW58	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1422508_3	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1422508_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1422508_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1422508_3	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-1422508_4	PHROG	phrog_4105	NA	unknown function
UHGV-1422508_4	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-1422508_5	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1422508_5	UniRef90	UniRef90_R8VXD9	Fibronectin type-III domain-containing protein	NA
UHGV-1422508_5	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-1422508_5	Pfam	PF19789	NA	DUF6273
UHGV-1422508_5	Structural annotation	PF19789, PF18911, NF010681, COG1470	NA	NA
UHGV-1422508_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1422508_7	PHROG	phrog_18725	NA	unknown function
UHGV-1422508_7	eggNOG-mapper	756499.Desde_2424	NA	NA
UHGV-1422508_8	PHROG	phrog_13879	NA	unknown function
UHGV-1422508_8	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-1422508_8	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-1422508_9	PHROG	phrog_1194	NA	unknown function
UHGV-1422508_9	Pfam	PF20458	NA	DUF6711
UHGV-1422508_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1422508_10	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-1422508_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1422508_10	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-1422508_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1422508_10	Structural annotation	PF09325	NA	NA
UHGV-1422508_11	eggNOG-mapper	469596.HMPREF9488_01312	NA	NA
UHGV-1422508_12	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-1422508_12	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-1422508_12	Pfam	PF16478	NA	DUF5055
UHGV-1422508_12	Structural annotation	PF16478	NA	NA
UHGV-1422508_13	PHROG	phrog_158	major tail protein	tail
UHGV-1422508_13	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-1422508_13	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-1422508_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1422508_14	PHROG	phrog_78	tail terminator	connector
UHGV-1422508_14	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1422508_16	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-1422508_17	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-1422508_17	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-1422508_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1422508_17	Structural annotation	TIGR01560	NA	NA
UHGV-1422508_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-1422508_18	UniRef90	UniRef90_A0A5B2YT70	N4-gp56 family major capsid protein	NA
UHGV-1422508_18	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-1422508_18	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1422508_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1422508_21	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-1422508_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1422508_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1422508_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1422508_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1422508_22	UniRef90	UniRef90_UPI00189F3DE6	phage portal protein	NA
UHGV-1422508_22	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1422508_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1422508_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1422508_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1422508_23	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-1422508_23	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-1422508_23	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1422508_23	COG	COG5410	NA	NA
UHGV-1422508_23	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1422508_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1422508_24	PHROG	phrog_95	integrase	integration and excision
UHGV-1422508_24	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-1422508_24	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-1422508_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1422508_24	Pfam	PF07508	Recombinase	Recombinase
UHGV-1422508_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1422508_24	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1422508_29	PHROG	phrog_4264	NA	unknown function
UHGV-1422508_32	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-1422508_32	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-1422508_32	UniRef90	UniRef90_UPI0018A02A45	DNA translocase FtsK	NA
UHGV-1422508_32	eggNOG-mapper	1163408.UU9_00480	Cell division protein ftsk	NA
UHGV-1422508_32	PADLOC	SspH_00004	SspH	SSP
UHGV-1422508_32	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-1422508_32	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-1422508_32	Structural annotation	PF01580, MF_01076, NF010404, COG0433	NA	NA