UHGV-1422948

Genome information

Genome length 23,010 bps

CDS count 31

Completeness 61.96% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-1422948
vOTU ID	vOTU-034787
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0168674
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.64
Jumbo phage	No

Genome content
Genome length	23,010 bps
GC content	36.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	95.06%
Average CDS length	707.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1422948_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1422948_1	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1422948_1	UniRef90	UniRef90_E2NR91	Terminase small subunit	NA
UHGV-1422948_1	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-1422948_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1422948_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1422948_1	Structural annotation	PF03592	NA	NA
UHGV-1422948_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1422948_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1422948_2	UniRef90	UniRef90_A0A417IN81	PBSX family phage terminase large subunit	NA
UHGV-1422948_2	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-1422948_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1422948_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1422948_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1422948_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1422948_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1422948_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-1422948_3	UniRef90	UniRef90_A0A417IN69	Phage portal protein	NA
UHGV-1422948_3	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-1422948_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1422948_3	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1422948_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1422948_4	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1422948_4	UniRef90	UniRef90_UPI001D09DF74	minor capsid protein	NA
UHGV-1422948_4	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-1422948_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1422948_4	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-1422948_4	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1422948_4	COG	COG2369	NA	NA
UHGV-1422948_4	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1422948_6	PHROG	phrog_3675	NA	unknown function
UHGV-1422948_6	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-1422948_6	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-1422948_6	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1422948_6	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-1422948_7	PHROG	phrog_30609	NA	unknown function
UHGV-1422948_7	Structural annotation	PF21485	NA	NA
UHGV-1422948_9	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1422948_9	UniRef90	UniRef90_A0A417IN83	NA	NA
UHGV-1422948_9	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-1422948_9	Pfam	PF14265	NA	DUF4355
UHGV-1422948_9	Structural annotation	PF14265	NA	NA
UHGV-1422948_10	PHROG	phrog_267	major head protein	head and packaging
UHGV-1422948_10	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-1422948_10	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-1422948_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1422948_11	UniRef90	UniRef90_A0A1C5TAF6	Rho termination factor, N-terminal domain	NA
UHGV-1422948_11	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1422948_11	Structural annotation	PF07498	NA	NA
UHGV-1422948_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1422948_12	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-1422948_12	eggNOG-mapper	1504823.CCMM01000008_gene1039	NA	NA
UHGV-1422948_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1422948_12	Structural annotation	PF05135	NA	NA
UHGV-1422948_13	PHROG	phrog_2168	NA	unknown function
UHGV-1422948_13	eggNOG-mapper	1211844.CBLM010000016_gene1488	NA	NA
UHGV-1422948_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1422948_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1422948_14	UniRef90	UniRef90_A0A1C5TVK4	Phage protein, HK97 gp10 family	NA
UHGV-1422948_14	eggNOG-mapper	1504823.CCMM01000008_gene1037	NA	NA
UHGV-1422948_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1422948_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1422948_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1422948_15	PHROG	phrog_78	tail terminator	connector
UHGV-1422948_15	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-1422948_15	Structural annotation	PF05657	NA	NA
UHGV-1422948_16	PHROG	phrog_158	major tail protein	tail
UHGV-1422948_16	UniRef90	UniRef90_A0A1C5TB95	Phage tail protein	NA
UHGV-1422948_16	eggNOG-mapper	1504823.CCMM01000008_gene1035	Phage tail tube protein, TTP	NA
UHGV-1422948_16	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1422948_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1422948_17	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1422948_17	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-1422948_17	eggNOG-mapper	1504823.CCMM01000008_gene1034	NA	NA
UHGV-1422948_17	Pfam	PF19591	NA	DUF6096
UHGV-1422948_17	Structural annotation	PF19591	NA	NA
UHGV-1422948_18	PHROG	phrog_2066	NA	unknown function
UHGV-1422948_18	eggNOG-mapper	1504823.CCMM01000008_gene1033	NA	NA
UHGV-1422948_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1422948_19	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-1422948_19	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-1422948_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1422948_19	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1422948_20	PHROG	phrog_1194	NA	unknown function
UHGV-1422948_20	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-1422948_20	Pfam	PF20458	NA	DUF6711
UHGV-1422948_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1422948_21	PHROG	phrog_15074	NA	unknown function
UHGV-1422948_21	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-1422948_21	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1422948_21	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1422948_22	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-1422948_22	UniRef90	UniRef90_A0A087BZT1	NA	NA
UHGV-1422948_22	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-1422948_22	Structural annotation	PF14874, NF038186	NA	NA
UHGV-1422948_23	PHROG	phrog_18110	NA	unknown function
UHGV-1422948_23	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1422948_23	COG	COG4926	Phage-related protein	NA
UHGV-1422948_24	PHROG	phrog_372	tail protein	tail
UHGV-1422948_24	UniRef90	UniRef90_UPI0006C32325	NA	NA
UHGV-1422948_24	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-1422948_24	Pfam	PF05895	NA	DUF859
UHGV-1422948_24	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1422948_25	PHROG	phrog_199	holin	lysis
UHGV-1422948_25	UniRef90	UniRef90_E2NU60	Toxin secretion/phage lysis holin	NA
UHGV-1422948_25	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-1422948_25	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1422948_25	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1422948_25	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1422948_25	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1422948_26	PHROG	phrog_918	NA	unknown function
UHGV-1422948_26	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-1422948_26	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-1422948_26	Pfam	PF19791	NA	DUF6275
UHGV-1422948_26	Structural annotation	PF19791	NA	NA
UHGV-1422948_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1422948_27	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-1422948_27	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-1422948_27	Pfam	PF14359	NA	DUF4406
UHGV-1422948_27	Structural annotation	PF14359	NA	NA
UHGV-1422948_28	PHROG	phrog_774	NA	unknown function
UHGV-1422948_28	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1422948_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1422948_29	PHROG	phrog_435	endolysin	lysis
UHGV-1422948_29	UniRef90	UniRef90_UPI001EE924D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1422948_29	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-1422948_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1422948_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1422948_29	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1422948_30	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-1422948_31	KOfam	K12952	ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]	NA
UHGV-1422948_31	PHROG	phrog_12316	ATPase	other
UHGV-1422948_31	UniRef90	UniRef90_UPI0005DEEE88	HAD-IC family P-type ATPase	NA
UHGV-1422948_31	eggNOG-mapper	469596.HMPREF9488_02814	NA	NA
UHGV-1422948_31	Pfam	PF00122	E1-E2 ATPase	E1-E2_ATPase
UHGV-1422948_31	NCBIFam	TIGR01494.1	HAD-IC family P-type ATPase	NA
UHGV-1422948_31	COG	COG0474	Magnesium-transporting ATPase (P-type)	NA