UHGV-1423036

Genome information

Genome length 21,725 bps

CDS count 26

Completeness 54.56% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-1423036
vOTU ID	vOTU-023946
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0159322
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.62
Jumbo phage	No

Genome content
Genome length	21,725 bps
GC content	45.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	87.46%
Average CDS length	735.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1423036_2	PHROG	phrog_26136	NA	unknown function
UHGV-1423036_4	PHROG	phrog_8834	NA	unknown function
UHGV-1423036_4	UniRef90	UniRef90_S2P1V5	Phage encoded transcriptional regulator, ArpU family	NA
UHGV-1423036_4	eggNOG-mapper	543734.LCABL_05720	NA	NA
UHGV-1423036_4	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1423036_4	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-1423036_5	PHROG	phrog_10865	NA	unknown function
UHGV-1423036_5	eggNOG-mapper	226185.EF_2022	NA	NA
UHGV-1423036_5	Pfam	PF20505	NA	DUF6731
UHGV-1423036_5	Structural annotation	PF20505, NF001463	NA	NA
UHGV-1423036_7	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1423036_7	PHROG	phrog_4646	transposase	integration and excision
UHGV-1423036_7	UniRef90	UniRef90_Q03AR5	Transposase, IS30 family	NA
UHGV-1423036_7	eggNOG-mapper	543734.LCABL_03570	PFAM Integrase, catalytic core	NA
UHGV-1423036_7	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1423036_7	Pfam	PF00665	Integrase core domain	rve
UHGV-1423036_7	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-1423036_7	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-1423036_7	Structural annotation	PF13936, PF02914, MF_01310, NF033563, COG2826	NA	NA
UHGV-1423036_8	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1423036_8	UniRef90	UniRef90_Q037C7	NA	NA
UHGV-1423036_8	eggNOG-mapper	1423732.BALS01000107_gene442	GcrA cell cycle regulator	NA
UHGV-1423036_8	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-1423036_8	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA
UHGV-1423036_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1423036_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1423036_9	UniRef90	UniRef90_Q037C9	Phage terminase, small subunit	NA
UHGV-1423036_9	eggNOG-mapper	543734.LCABL_13230	Terminase small subunit	NA
UHGV-1423036_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1423036_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1423036_9	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1423036_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1423036_10	PHROG	phrog_10250	NA	unknown function
UHGV-1423036_10	UniRef90	UniRef90_A0A826HMQ6	Terminase_6C domain-containing protein	NA
UHGV-1423036_10	eggNOG-mapper	543734.LCABL_13240	Terminase-like family	NA
UHGV-1423036_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1423036_10	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1423036_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1423036_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-1423036_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1423036_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-1423036_11	UniRef90	UniRef90_Q037D1	Phage portal protein, SPP1 Gp6-like protein	NA
UHGV-1423036_11	eggNOG-mapper	543734.LCABL_13250	Phage portal protein	NA
UHGV-1423036_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1423036_11	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1423036_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1423036_12	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1423036_12	UniRef90	UniRef90_A0A0P0I7N0	Phage_Mu_F domain-containing protein	NA
UHGV-1423036_12	eggNOG-mapper	543734.LCABL_13260	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1423036_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1423036_12	COG	COG2369	NA	NA
UHGV-1423036_12	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1423036_13	PHROG	phrog_12216	NA	unknown function
UHGV-1423036_13	eggNOG-mapper	1158614.I592_02269	NA	NA
UHGV-1423036_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1423036_14	UniRef90	UniRef90_Q037D5	NA	NA
UHGV-1423036_14	eggNOG-mapper	543734.LCABL_13270	NA	NA
UHGV-1423036_14	Pfam	PF14265	NA	DUF4355
UHGV-1423036_14	Structural annotation	PF14265	NA	NA
UHGV-1423036_15	PHROG	phrog_909	major head protein	head and packaging
UHGV-1423036_15	UniRef90	UniRef90_Q037D6	NA	NA
UHGV-1423036_15	eggNOG-mapper	543734.LCABL_13280	NA	NA
UHGV-1423036_15	Structural annotation	PF02924	NA	NA
UHGV-1423036_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-1423036_16	UniRef90	UniRef90_UPI001E3947D5	major capsid protein	NA
UHGV-1423036_16	eggNOG-mapper	543734.LCABL_13300	Phage major capsid protein E	NA
UHGV-1423036_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1423036_16	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1423036_17	PHROG	phrog_4417	NA	unknown function
UHGV-1423036_17	UniRef90	UniRef90_K6SGT4	NA	NA
UHGV-1423036_17	eggNOG-mapper	543734.LCABL_13320	NA	NA
UHGV-1423036_17	Structural annotation	PF03414, NF041524, COG1442	NA	NA
UHGV-1423036_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1423036_18	UniRef90	UniRef90_Q037E0	NA	NA
UHGV-1423036_18	eggNOG-mapper	543734.LCABL_13330	Phage gp6-like head-tail connector protein	NA
UHGV-1423036_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1423036_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1423036_19	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1423036_19	UniRef90	UniRef90_A0A179Y7E7	NA	NA
UHGV-1423036_19	eggNOG-mapper	568703.LGG_01131	NA	NA
UHGV-1423036_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1423036_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1423036_20	UniRef90	UniRef90_Q037E2	Phage head tail joining protein	NA
UHGV-1423036_20	eggNOG-mapper	543734.LCABL_13350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1423036_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1423036_20	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1423036_21	PHROG	phrog_176	tail terminator	connector
UHGV-1423036_21	UniRef90	UniRef90_Q037E3	Phage major structural protein	NA
UHGV-1423036_21	eggNOG-mapper	543734.LCABL_13360	NA	NA
UHGV-1423036_21	Structural annotation	PF11367	NA	NA
UHGV-1423036_22	PHROG	phrog_238	major tail protein	tail
UHGV-1423036_22	UniRef90	UniRef90_A0A806LDX6	Phage tail protein	NA
UHGV-1423036_22	eggNOG-mapper	543734.LCABL_13370	Phage tail tube protein	NA
UHGV-1423036_22	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1423036_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1423036_23	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1423036_23	UniRef90	UniRef90_Q037E5	NA	NA
UHGV-1423036_23	eggNOG-mapper	543734.LCABL_13380	Phage tail assembly chaperone protein, TAC	NA
UHGV-1423036_23	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1423036_23	Structural annotation	PF12363	NA	NA
UHGV-1423036_24	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1423036_24	UniRef90	UniRef90_Q037E6	NA	NA
UHGV-1423036_24	eggNOG-mapper	543734.LCABL_13390	NA	NA
UHGV-1423036_25	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-1423036_25	UniRef90	UniRef90_Q037E7	Minor tail protein gp26-like protein	NA
UHGV-1423036_25	eggNOG-mapper	543734.LCABL_13400	Phage tail tape measure protein	NA
UHGV-1423036_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1423036_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1423036_25	COG	COG5283	Phage-related tail protein	NA
UHGV-1423036_25	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1423036_26	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1423036_26	UniRef90	UniRef90_UPI00117A6368	phage tail family protein	NA
UHGV-1423036_26	eggNOG-mapper	543734.LCABL_13410	Phage tail protein	NA
UHGV-1423036_26	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1423036_26	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1423036_26	COG	COG4722	Phage-related protein YomH	NA