UHGV-1423332

Genome information

Genome length 24,369 bps

CDS count 29

Completeness 59.49% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-1423332
vOTU ID	vOTU-025146
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0178026
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.36
Jumbo phage	No

Genome content
Genome length	24,369 bps
GC content	52.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	95.77%
Average CDS length	807.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1423332_1	eggNOG-mapper	716541.ECL_01717	NA	NA
UHGV-1423332_2	PHROG	phrog_25729	NA	unknown function
UHGV-1423332_3	PHROG	phrog_4524	NA	unknown function
UHGV-1423332_3	eggNOG-mapper	906669.G8C7R6_9CAUD	NA	NA
UHGV-1423332_4	PHROG	phrog_7961	NA	unknown function
UHGV-1423332_4	Structural annotation	NF012201	NA	NA
UHGV-1423332_5	PHROG	phrog_2589	tail protein	tail
UHGV-1423332_5	UniRef90	UniRef90_A0A6G3F5I4	NA	NA
UHGV-1423332_5	eggNOG-mapper	1115515.EV102420_11_00020	Fibronectin type 3 domain	NA
UHGV-1423332_5	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1423332_5	Pfam	PF09327	NA	DUF1983
UHGV-1423332_5	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1423332_5	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14109, NF040662, COG4733	NA	NA
UHGV-1423332_6	PHROG	phrog_32	tail assembly protein	tail
UHGV-1423332_6	UniRef90	UniRef90_A0A330DX40	Tail assembly protein	NA
UHGV-1423332_6	eggNOG-mapper	1115515.EV102420_11_00030	Bacteriophage lambda tail assembly protein I	NA
UHGV-1423332_6	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-1423332_6	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-1423332_6	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-1423332_7	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-1423332_7	PHROG	phrog_30	minor tail protein	tail
UHGV-1423332_7	UniRef90	UniRef90_A0A0F1A581	Peptidase P60	NA
UHGV-1423332_7	eggNOG-mapper	1115515.EV102420_11_00040	Corresponds to locus_tag	NA
UHGV-1423332_7	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-1423332_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1423332_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1423332_7	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-1423332_8	PHROG	phrog_18	minor tail protein	tail
UHGV-1423332_8	UniRef90	UniRef90_A0A2H9EHC2	Phage minor tail protein L	NA
UHGV-1423332_8	eggNOG-mapper	1115515.EV102420_11_00050	Phage minor tail protein L	NA
UHGV-1423332_8	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1423332_8	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-1423332_8	COG	COG4672	Phage tail protein	NA
UHGV-1423332_8	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-1423332_9	PHROG	phrog_14	minor tail protein	tail
UHGV-1423332_9	UniRef90	UniRef90_A0A7H0MAW3	Phage tail protein	NA
UHGV-1423332_9	eggNOG-mapper	1115515.EV102420_11_00060	Phage minor tail protein	NA
UHGV-1423332_9	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-1423332_9	COG	COG4718	Phage tail protein	NA
UHGV-1423332_9	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1423332_10	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1423332_10	UniRef90	UniRef90_UPI001D0C0486	phage tail tape measure protein	NA
UHGV-1423332_10	eggNOG-mapper	35703.DQ02_21640	tape measure protein	NA
UHGV-1423332_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1423332_10	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-1423332_10	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-1423332_10	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-1423332_10	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1423332_10	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-1423332_11	PHROG	phrog_2320	NA	unknown function
UHGV-1423332_11	Structural annotation	PF07430	NA	NA
UHGV-1423332_12	PHROG	phrog_14766	tail protein	tail
UHGV-1423332_12	UniRef90	UniRef90_A0A6S5JNV0	Phage tail protein	NA
UHGV-1423332_12	eggNOG-mapper	1147157.K7PJX0_9CAUD	NA	NA
UHGV-1423332_12	Pfam	PF13227	NA	DUF4035
UHGV-1423332_12	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-1423332_13	PHROG	phrog_14766	tail protein	tail
UHGV-1423332_13	UniRef90	UniRef90_A0A411GER6	Phage tail protein	NA
UHGV-1423332_13	eggNOG-mapper	911008.GLAD_04137	tail assembly chaperone	NA
UHGV-1423332_13	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-1423332_13	Structural annotation	PF06222	NA	NA
UHGV-1423332_14	PHROG	phrog_11009	NA	unknown function
UHGV-1423332_14	UniRef90	UniRef90_K7P835	Major tail subunit	NA
UHGV-1423332_14	eggNOG-mapper	1147157.K7PHL2_9CAUD	NA	NA
UHGV-1423332_14	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1423332_14	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1423332_15	PHROG	phrog_347	tail terminator	connector
UHGV-1423332_15	UniRef90	UniRef90_A0A3S0P911	NA	NA
UHGV-1423332_15	eggNOG-mapper	37554.Q9MCS8_BPHK7	NA	NA
UHGV-1423332_15	Pfam	PF11367	NA	DUF3168
UHGV-1423332_15	Structural annotation	PF11367	NA	NA
UHGV-1423332_16	PHROG	phrog_23409	NA	unknown function
UHGV-1423332_16	UniRef90	UniRef90_A0A6G4LJN0	HK97 gp10 family phage protein	NA
UHGV-1423332_16	eggNOG-mapper	432201.K7P7Y7_9CAUD	exonuclease activity	NA
UHGV-1423332_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1423332_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1423332_16	Structural annotation	TIGR01725	NA	NA
UHGV-1423332_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-1423332_17	UniRef90	UniRef90_A0A0M3EWB3	Head-tail adaptor protein	NA
UHGV-1423332_17	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-1423332_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1423332_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1423332_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1423332_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1423332_18	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1423332_18	UniRef90	UniRef90_A0A8B2USY7	Phage gp6-like head-tail connector protein	NA
UHGV-1423332_18	eggNOG-mapper	1399774.JDWH01000035_gene2225	Phage gp6-like head-tail connector protein	NA
UHGV-1423332_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1423332_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1423332_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1423332_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1423332_19	UniRef90	UniRef90_A0A7T0DT05	Phage major capsid protein	NA
UHGV-1423332_19	eggNOG-mapper	741091.Rahaq_1809	capsid protein	NA
UHGV-1423332_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1423332_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1423332_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1423332_19	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-1423332_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1423332_20	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-1423332_20	UniRef90	UniRef90_A0A837F7M9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1423332_20	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-1423332_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1423332_20	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-1423332_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1423332_21	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-1423332_21	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-1423332_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1423332_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1423332_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1423332_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1423332_22	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-1423332_22	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-1423332_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1423332_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1423332_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1423332_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1423332_23	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-1423332_23	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-1423332_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1423332_23	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1423332_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1423332_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1423332_24	UniRef90	UniRef90_A0A0V9JQR4	HNHc domain-containing protein	NA
UHGV-1423332_24	eggNOG-mapper	573061.Clocel_0771	NUMOD4 domain protein	NA
UHGV-1423332_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1423332_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1423332_24	Structural annotation	PF02796, NF040785	NA	NA
UHGV-1423332_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1423332_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1423332_25	UniRef90	UniRef90_A0A2T9USW7	HNH endonuclease	NA
UHGV-1423332_25	eggNOG-mapper	1147150.K7PHK9_9CAUD	HNH endonuclease	NA
UHGV-1423332_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1423332_25	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1423332_26	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1423332_26	eggNOG-mapper	1399774.JDWH01000016_gene3435	Glycosyl transferase, family 2	NA
UHGV-1423332_26	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-1423332_26	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-1423332_27	PHROG	phrog_3593	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1423332_27	UniRef90	UniRef90_A0A6G6JMG1	HNH endonuclease	NA
UHGV-1423332_27	eggNOG-mapper	1147158.K7PJS8_9CAUD	HNH endonuclease	NA
UHGV-1423332_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1423332_27	Pfam	PF00847	AP2 domain	AP2
UHGV-1423332_28	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1423332_28	UniRef90	UniRef90_UPI000C22D06B	glycosyltransferase family 2 protein	NA
UHGV-1423332_28	eggNOG-mapper	1147158.K7PKP3_9CAUD	transferase activity	NA
UHGV-1423332_28	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-1423332_29	PHROG	phrog_23516	NA	unknown function
UHGV-1423332_29	eggNOG-mapper	314345.SPV1_04618	NA	NA