UHGV-1424116

Genome information

Genome length 23,083 bps

CDS count 30

Completeness 55.17% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1424116
vOTU ID	vOTU-029315
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0169195
BioSample	SAMEA2580163
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.75
Jumbo phage	No

Genome content
Genome length	23,083 bps
GC content	34.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.32%
Average CDS length	711.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1424116_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1424116_5	UniRef90	UniRef90_UPI00047CBBC0	NA	NA
UHGV-1424116_5	eggNOG-mapper	1487921.DP68_08815	NA	NA
UHGV-1424116_5	Pfam	PF07374	NA	DUF1492
UHGV-1424116_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1424116_6	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1424116_6	UniRef90	UniRef90_F2JK50	Terminase small subunit	NA
UHGV-1424116_6	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-1424116_6	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1424116_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1424116_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1424116_6	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1424116_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1424116_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1424116_7	UniRef90	UniRef90_UPI0018CEFBA6	PBSX family phage terminase large subunit	NA
UHGV-1424116_7	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-1424116_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1424116_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1424116_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1424116_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-1424116_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1424116_8	PHROG	phrog_64	portal protein	head and packaging
UHGV-1424116_8	UniRef90	UniRef90_A0A5B9YF00	Phage portal protein	NA
UHGV-1424116_8	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-1424116_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1424116_8	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1424116_9	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1424116_9	UniRef90	UniRef90_UPI0006B63C36	minor capsid protein	NA
UHGV-1424116_9	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-1424116_9	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1424116_9	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1424116_9	COG	COG2369	NA	NA
UHGV-1424116_9	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1424116_11	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1424116_11	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-1424116_11	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-1424116_11	Pfam	PF14359	NA	DUF4406
UHGV-1424116_11	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1424116_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1424116_12	UniRef90	UniRef90_UPI0006B5B8F9	phage scaffolding protein	NA
UHGV-1424116_12	eggNOG-mapper	97137.C821_00687	Phage minor structural protein GP20	NA
UHGV-1424116_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1424116_12	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1424116_13	PHROG	phrog_909	major head protein	head and packaging
UHGV-1424116_13	UniRef90	UniRef90_A0A0E3K1C5	NA	NA
UHGV-1424116_13	eggNOG-mapper	332101.JIBU02000023_gene4814	NA	NA
UHGV-1424116_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-1424116_14	UniRef90	UniRef90_UPI0006B5C145	major capsid protein	NA
UHGV-1424116_14	eggNOG-mapper	642492.Clole_2756	Phage major capsid protein E	NA
UHGV-1424116_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1424116_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1424116_15	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1424116_15	UniRef90	UniRef90_UPI0006B5981B	phage head-tail connector protein	NA
UHGV-1424116_15	eggNOG-mapper	1280692.AUJL01000025_gene2078	Phage gp6-like head-tail connector protein	NA
UHGV-1424116_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1424116_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1424116_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1424116_17	UniRef90	UniRef90_UPI0018E25FE5	HK97 gp10 family phage protein	NA
UHGV-1424116_17	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1424116_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1424116_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1424116_17	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1424116_18	eggNOG-mapper	1123304.AQYA01000037_gene229	NA	NA
UHGV-1424116_19	PHROG	phrog_158	major tail protein	tail
UHGV-1424116_19	UniRef90	UniRef90_A0A7C6P642	Phage tail protein	NA
UHGV-1424116_19	eggNOG-mapper	1140002.I570_01436	Phage tail tube protein, TTP	NA
UHGV-1424116_19	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1424116_19	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1424116_20	UniRef90	UniRef90_UPI0006B5085E	NA	NA
UHGV-1424116_20	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-1424116_20	Pfam	PF19591	NA	DUF6096
UHGV-1424116_20	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-1424116_21	eggNOG-mapper	1499683.CCFF01000017_gene2924	NA	NA
UHGV-1424116_22	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-1424116_22	UniRef90	UniRef90_A0A383RGU3	Putative phage protein	NA
UHGV-1424116_22	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-1424116_22	COG	COG5283	Phage-related tail protein	NA
UHGV-1424116_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1424116_23	PHROG	phrog_1194	NA	unknown function
UHGV-1424116_23	eggNOG-mapper	1122919.KB905559_gene1345	NA	NA
UHGV-1424116_23	Pfam	PF20458	NA	DUF6711
UHGV-1424116_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1424116_25	PHROG	phrog_38044	NA	unknown function
UHGV-1424116_25	eggNOG-mapper	1150989.H6WXP7_9CAUD	virus tail	NA
UHGV-1424116_27	PHROG	phrog_3639	minor tail protein	tail
UHGV-1424116_27	UniRef90	UniRef90_UPI0006B5D213	BppU family phage baseplate upper protein	NA
UHGV-1424116_27	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1424116_27	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1424116_27	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1424116_28	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1424116_29	PHROG	phrog_9829	NA	unknown function
UHGV-1424116_29	eggNOG-mapper	929506.CbC4_1229	NA	NA
UHGV-1424116_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1424116_30	PHROG	phrog_3088	amidase	lysis
UHGV-1424116_30	UniRef90	UniRef90_A0A7C6JR46	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1424116_30	eggNOG-mapper	1499689.CCNN01000007_gene1846	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1424116_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1424116_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA