UHGV-1424196

Genome information

Genome length 24,446 bps

CDS count 32

Completeness 52.92% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-1424196
vOTU ID	vOTU-034814
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0178510
BioSample	NA
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.34
Jumbo phage	No

Genome content
Genome length	24,446 bps
GC content	38.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	97.01%
Average CDS length	746.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1424196_1	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1424196_1	PHROG	phrog_35286	NA	unknown function
UHGV-1424196_1	eggNOG-mapper	862517.HMPREF9225_1624	Collagen triple helix repeat (20 copies)	NA
UHGV-1424196_1	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1424196_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1424196_1	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1424196_2	PHROG	phrog_5056	NA	unknown function
UHGV-1424196_2	eggNOG-mapper	665950.HMPREF1025_02516	NA	NA
UHGV-1424196_3	PHROG	phrog_5056	NA	unknown function
UHGV-1424196_5	PHROG	phrog_36643	NA	unknown function
UHGV-1424196_5	UniRef90	UniRef90_E0NN89	Fibronectin type-III domain-containing protein	NA
UHGV-1424196_5	eggNOG-mapper	862517.HMPREF9225_1628	NA	NA
UHGV-1424196_6	KOfam	K06871	NA	NA
UHGV-1424196_6	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-1424196_6	UniRef90	UniRef90_G4D5F4	Radical SAM core domain-containing protein	NA
UHGV-1424196_6	eggNOG-mapper	997350.HMPREF9129_1634	Six-Cys-in-45 modification radical SAM protein	NA
UHGV-1424196_6	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-1424196_6	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1424196_6	NCBIFam	TIGR04085.1	SPASM domain-containing protein	NA
UHGV-1424196_6	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-1424196_6	Structural annotation	PF04055, MF_00660, TIGR04136, COG0641	NA	NA
UHGV-1424196_7	eggNOG-mapper	862517.HMPREF9225_1630	NA	NA
UHGV-1424196_8	eggNOG-mapper	862517.HMPREF9225_1631	NA	NA
UHGV-1424196_9	PHROG	phrog_521	tail protein	tail
UHGV-1424196_9	UniRef90	UniRef90_UPI000568E341	NA	NA
UHGV-1424196_9	eggNOG-mapper	1118057.CAGX01000020_gene1599	NA	NA
UHGV-1424196_10	PHROG	phrog_6	baseplate protein	tail
UHGV-1424196_10	UniRef90	UniRef90_UPI0005666019	baseplate J/gp47 family protein	NA
UHGV-1424196_10	eggNOG-mapper	1118057.CAGX01000020_gene1600	baseplate J-like protein	NA
UHGV-1424196_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1424196_10	COG	COG3299	NA	NA
UHGV-1424196_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1424196_11	PHROG	phrog_120	baseplate protein	tail
UHGV-1424196_11	UniRef90	UniRef90_UPI0002F3FDF6	NA	NA
UHGV-1424196_11	eggNOG-mapper	862517.HMPREF9225_1634	NA	NA
UHGV-1424196_11	Pfam	PF10934	NA	DUF2634
UHGV-1424196_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1424196_11	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1424196_13	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1424196_13	PHROG	phrog_400	tail protein	tail
UHGV-1424196_13	UniRef90	UniRef90_UPI0002D2D515	NlpC/P60 family protein	NA
UHGV-1424196_13	eggNOG-mapper	1118057.CAGX01000020_gene1603	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1424196_13	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1424196_13	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1424196_13	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG4379, COG0791	NA	NA
UHGV-1424196_14	PHROG	phrog_380	endolysin	lysis
UHGV-1424196_14	UniRef90	UniRef90_T3DIR4	LysM domain protein	NA
UHGV-1424196_14	eggNOG-mapper	1118057.CAGX01000020_gene1604	positive regulation of growth rate	NA
UHGV-1424196_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1424196_15	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1424196_15	UniRef90	UniRef90_UPI0002FF39AC	tape measure protein	NA
UHGV-1424196_15	eggNOG-mapper	1118057.CAGX01000020_gene1605	tape measure	NA
UHGV-1424196_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1424196_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1424196_15	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1424196_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1424196_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1424196_16	UniRef90	UniRef90_A0A379C642	Phage XkdN-like protein	NA
UHGV-1424196_16	eggNOG-mapper	875454.BAEW01000002_gene467	XkdN-like protein	NA
UHGV-1424196_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1424196_16	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1424196_17	PHROG	phrog_365	tail protein	tail
UHGV-1424196_17	UniRef90	UniRef90_A0A379C7N6	Phage-like element PBSX protein xkdM	NA
UHGV-1424196_17	eggNOG-mapper	97138.C820_00996	Phage tail tube protein	NA
UHGV-1424196_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1424196_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1424196_18	PHROG	phrog_279	tail sheath	tail
UHGV-1424196_18	UniRef90	UniRef90_UPI0003143487	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1424196_18	eggNOG-mapper	1118057.CAGX01000020_gene1608	PFAM Phage tail sheath protein	NA
UHGV-1424196_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1424196_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1424196_18	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1424196_19	PHROG	phrog_966	NA	unknown function
UHGV-1424196_19	eggNOG-mapper	642492.Clole_2751	NA	NA
UHGV-1424196_20	PHROG	phrog_525	NA	unknown function
UHGV-1424196_20	Pfam	PF20765	NA	DUF6838
UHGV-1424196_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1424196_21	UniRef90	UniRef90_UPI0006874C9E	HK97 gp10 family phage protein	NA
UHGV-1424196_21	eggNOG-mapper	1118057.CAGX01000020_gene1611	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1424196_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1424196_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1424196_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1424196_22	eggNOG-mapper	469618.FVAG_01313	NA	NA
UHGV-1424196_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1424196_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-1424196_24	UniRef90	UniRef90_UPI00031179C1	major capsid protein	NA
UHGV-1424196_24	eggNOG-mapper	1118057.CAGX01000020_gene1614	Phage major capsid protein E	NA
UHGV-1424196_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1424196_24	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1424196_25	PHROG	phrog_909	major head protein	head and packaging
UHGV-1424196_25	eggNOG-mapper	1118057.CAGX01000020_gene1615	NA	NA
UHGV-1424196_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1424196_26	UniRef90	UniRef90_UPI00031D776B	phage scaffolding protein	NA
UHGV-1424196_26	eggNOG-mapper	1118057.CAGX01000020_gene1616	Phage minor structural protein GP20	NA
UHGV-1424196_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1424196_27	PHROG	phrog_34144	NA	unknown function
UHGV-1424196_27	eggNOG-mapper	1118057.CAGX01000020_gene1617	NA	NA
UHGV-1424196_27	Structural annotation	PF20111	NA	NA
UHGV-1424196_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1424196_28	UniRef90	UniRef90_UPI0002F591B7	minor capsid protein	NA
UHGV-1424196_28	eggNOG-mapper	1118057.CAGX01000020_gene1618	Phage Mu protein F like protein	NA
UHGV-1424196_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1424196_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1424196_28	COG	COG2369	NA	NA
UHGV-1424196_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1424196_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1424196_29	UniRef90	UniRef90_UPI0002D4AAFA	phage portal protein	NA
UHGV-1424196_29	eggNOG-mapper	1118057.CAGX01000020_gene1619	phage portal protein, SPP1	NA
UHGV-1424196_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1424196_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1424196_30	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-1424196_30	UniRef90	UniRef90_UPI00030C6708	phage terminase large subunit	NA
UHGV-1424196_30	eggNOG-mapper	1118057.CAGX01000020_gene1620	TIGRFAM Phage	NA
UHGV-1424196_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1424196_30	COG	COG5410	NA	NA
UHGV-1424196_30	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1424196_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1424196_31	UniRef90	UniRef90_UPI0010FE50E8	transposase	NA
UHGV-1424196_31	eggNOG-mapper	1118057.CAGX01000020_gene1623	transposase activity	NA
UHGV-1424196_31	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1424196_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1424196_31	Structural annotation	PF07141	NA	NA
UHGV-1424196_32	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1424196_32	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1424196_32	UniRef90	UniRef90_A0A2H4JHY6	Putative transferase	NA
UHGV-1424196_32	eggNOG-mapper	1118057.CAGX01000020_gene1624	ParB-like nuclease domain	NA
UHGV-1424196_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1424196_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1424196_32	COG	COG0863	DNA modification methylase	NA