UHGV-1425053

Genome information

Genome length 34,305 bps

CDS count 41

Completeness 88.89% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1425053
vOTU ID	vOTU-018462
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0234981
BioSample	SAMEA3664828
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.53
Jumbo phage	No

Genome content
Genome length	34,305 bps
GC content	33.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	86.90%
Average CDS length	730.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1425053_2	eggNOG-mapper	592026.GCWU0000282_002505	sequence-specific DNA binding	NA
UHGV-1425053_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1425053_3	UniRef90	UniRef90_A0A3D5LR66	Protein phosphatase	NA
UHGV-1425053_3	eggNOG-mapper	411902.CLOBOL_03859	NA	NA
UHGV-1425053_3	AcrCatalog	cluster_13845	NA	NA
UHGV-1425053_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1425053_5	PHROG	phrog_20388	endolysin	lysis
UHGV-1425053_5	UniRef90	UniRef90_A0A354HLY5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1425053_5	eggNOG-mapper	908340.HMPREF9406_0181	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1425053_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1425053_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1425053_5	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-1425053_6	PHROG	phrog_199	holin	lysis
UHGV-1425053_6	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-1425053_6	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-1425053_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1425053_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1425053_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1425053_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1425053_10	PHROG	phrog_1220	head protein	head and packaging
UHGV-1425053_10	UniRef90	UniRef90_A0A7M4B3C1	Phage structural protein	NA
UHGV-1425053_10	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-1425053_11	PHROG	phrog_538	minor tail protein	tail
UHGV-1425053_11	UniRef90	UniRef90_UPI001D076D06	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1425053_11	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-1425053_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1425053_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1425053_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1425053_12	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-1425053_12	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-1425053_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1425053_12	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1425053_13	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1425053_13	PHROG	phrog_5218	NA	unknown function
UHGV-1425053_13	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-1425053_13	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-1425053_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1425053_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1425053_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1425053_15	PHROG	phrog_88	major tail protein	tail
UHGV-1425053_15	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-1425053_15	eggNOG-mapper	1209989.TepiRe1_2598	NA	NA
UHGV-1425053_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1425053_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1425053_16	Structural annotation	PF05657	NA	NA
UHGV-1425053_17	Structural annotation	TIGR01725	NA	NA
UHGV-1425053_18	UniRef90	UniRef90_A0A416HJI0	Head-tail adaptor protein	NA
UHGV-1425053_18	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-1425053_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1425053_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1425053_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1425053_19	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-1425053_19	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-1425053_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1425053_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1425053_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1425053_20	UniRef90	UniRef90_R6NN39	Phage major capsid protein HK97 family	NA
UHGV-1425053_20	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-1425053_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1425053_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1425053_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1425053_20	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1425053_21	KOfam	K06904	NA	NA
UHGV-1425053_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1425053_21	UniRef90	UniRef90_R5W1K4	Putative phage prohead protease	NA
UHGV-1425053_21	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-1425053_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1425053_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1425053_21	COG	COG3740	Phage head maturation protease	NA
UHGV-1425053_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1425053_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-1425053_22	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-1425053_22	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-1425053_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1425053_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1425053_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1425053_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1425053_23	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-1425053_23	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-1425053_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1425053_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1425053_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1425053_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1425053_25	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1425053_25	UniRef90	UniRef90_R6NCD1	HNH domain-containing protein	NA
UHGV-1425053_25	eggNOG-mapper	293826.Amet_2409	HNH endonuclease	NA
UHGV-1425053_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1425053_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1425053_25	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1425053_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1425053_26	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-1425053_26	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-1425053_26	Structural annotation	PF07141	NA	NA
UHGV-1425053_27	Structural annotation	PF02996	NA	NA
UHGV-1425053_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1425053_28	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-1425053_28	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-1425053_28	Structural annotation	PF21578	NA	NA
UHGV-1425053_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1425053_29	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1425053_29	UniRef90	UniRef90_W0U733	Putative ParB-like partition protein	NA
UHGV-1425053_29	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-1425053_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1425053_29	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1425053_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1425053_29	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1425053_31	PHROG	phrog_24518	NA	unknown function
UHGV-1425053_31	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-1425053_36	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-1425053_37	UniRef90	UniRef90_A0A6I3PK55	Helix-turn-helix domain-containing protein	NA
UHGV-1425053_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1425053_37	COG	COG5499	Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain	NA
UHGV-1425053_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1425053_38	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1425053_38	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-1425053_38	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-1425053_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1425053_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1425053_38	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-1425053_39	PHROG	phrog_1914	NA	unknown function
UHGV-1425053_39	UniRef90	UniRef90_A0A355V1W2	Peptidase_M78 domain-containing protein	NA
UHGV-1425053_39	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1425053_39	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1425053_39	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1425053_39	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1425053_41	KOfam	K14059	int; integrase	NA
UHGV-1425053_41	PHROG	phrog_1	integrase	integration and excision
UHGV-1425053_41	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-1425053_41	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1425053_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1425053_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1425053_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA