UHGV-1425542

Genome information

Genome length 21,611 bps

CDS count 34

Completeness 66.65% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1425542
vOTU ID	vOTU-034838
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0158431
BioSample	SAMN05414977
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.29
Jumbo phage	No

Genome content
Genome length	21,611 bps
GC content	43.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	93.04%
Average CDS length	597.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1425542_2	eggNOG-mapper	471875.RUMLAC_02311	Helix-turn-helix XRE-family like proteins	NA
UHGV-1425542_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1425542_3	UniRef90	UniRef90_A0A350XYL2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1425542_3	eggNOG-mapper	272558.10176295	NlpC/P60 family	NA
UHGV-1425542_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1425542_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1425542_4	UniRef90	UniRef90_A0A7C7EVC4	MurNAc-LAA domain-containing protein (Fragment)	NA
UHGV-1425542_4	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1425542_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1425542_5	PHROG	phrog_263	holin	lysis
UHGV-1425542_5	UniRef90	UniRef90_A0A355KVP4	Phage holin	NA
UHGV-1425542_5	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-1425542_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1425542_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1425542_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1425542_6	PHROG	phrog_937	hemolysin	other
UHGV-1425542_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1425542_12	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-1425542_12	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1425542_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1425542_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1425542_12	COG	COG4926	Phage-related protein	NA
UHGV-1425542_13	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-1425542_13	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1425542_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1425542_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1425542_14	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-1425542_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1425542_14	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-1425542_14	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-1425542_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1425542_14	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1425542_15	Structural annotation	PF11836	NA	NA
UHGV-1425542_16	PHROG	phrog_88	major tail protein	tail
UHGV-1425542_16	UniRef90	UniRef90_UPI000BA43BBF	major tail protein	NA
UHGV-1425542_16	eggNOG-mapper	1121428.DESHY_10070___1	phage major tail protein, phi13 family	NA
UHGV-1425542_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1425542_17	eggNOG-mapper	573061.Clocel_3971	High confidence in function and specificity	NA
UHGV-1425542_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1425542_18	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-1425542_18	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-1425542_18	Structural annotation	TIGR01725	NA	NA
UHGV-1425542_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1425542_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1425542_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1425542_20	PHROG	phrog_5223	neck protein	connector
UHGV-1425542_20	UniRef90	UniRef90_A0A1J9V7A2	DNA-packaging protein	NA
UHGV-1425542_20	eggNOG-mapper	318464.IO99_13745	NA	NA
UHGV-1425542_20	Structural annotation	TIGR01560	NA	NA
UHGV-1425542_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1425542_21	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-1425542_21	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1425542_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1425542_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1425542_21	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1425542_22	KOfam	K06904	NA	NA
UHGV-1425542_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1425542_22	UniRef90	UniRef90_A0A2V2GKJ3	HK97 family phage prohead protease	NA
UHGV-1425542_22	eggNOG-mapper	1321814.HMPREF9089_00929	Caudovirus prohead serine protease	NA
UHGV-1425542_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1425542_22	COG	COG3740	Phage head maturation protease	NA
UHGV-1425542_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1425542_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1425542_23	UniRef90	UniRef90_A0A2V2GK98	Portal protein	NA
UHGV-1425542_23	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-1425542_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1425542_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1425542_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1425542_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1425542_24	UniRef90	UniRef90_C9LCN6	Putative phage terminase, large subunit	NA
UHGV-1425542_24	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-1425542_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1425542_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1425542_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1425542_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1425542_25	PHROG	phrog_1066	NA	unknown function
UHGV-1425542_25	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-1425542_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1425542_26	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-1425542_26	eggNOG-mapper	1203606.HMPREF1526_01332	HNH nucleases	NA
UHGV-1425542_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1425542_27	Structural annotation	PF09055	NA	NA
UHGV-1425542_28	PHROG	phrog_11237	NA	unknown function
UHGV-1425542_28	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-1425542_29	PHROG	phrog_824	NA	unknown function
UHGV-1425542_29	UniRef90	UniRef90_R6DT92	VRR-NUC domain-containing protein	NA
UHGV-1425542_29	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-1425542_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1425542_29	Structural annotation	PF08774	NA	NA
UHGV-1425542_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1425542_30	eggNOG-mapper	561177.ANHYDRO_01389	NA	NA
UHGV-1425542_30	Structural annotation	PF21578, NF033538	NA	NA
UHGV-1425542_31	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1425542_31	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-1425542_31	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1425542_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev