UHGV-1426132

Genome information

Genome length 22,900 bps

CDS count 37

Completeness 53.35% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-1426132
vOTU ID	vOTU-039123
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0167897
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.37
Jumbo phage	No

Genome content
Genome length	22,900 bps
GC content	47.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.99%
Average CDS length	567.97 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1426132_2	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-1426132_3	PHROG	phrog_4433	NA	unknown function
UHGV-1426132_3	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-1426132_3	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1426132_3	Structural annotation	PF12120, NF000318	NA	NA
UHGV-1426132_4	PHROG	phrog_8470	NA	unknown function
UHGV-1426132_4	UniRef90	UniRef90_UPI001D07A49A	PcfJ domain-containing protein	NA
UHGV-1426132_4	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-1426132_4	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1426132_4	Structural annotation	PF14284	NA	NA
UHGV-1426132_5	PHROG	phrog_15077	NA	unknown function
UHGV-1426132_5	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-1426132_5	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-1426132_5	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1426132_6	PHROG	phrog_7566	NA	unknown function
UHGV-1426132_6	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-1426132_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1426132_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1426132_9	UniRef90	UniRef90_A8S0J4	Single-stranded DNA-binding protein	NA
UHGV-1426132_9	eggNOG-mapper	411902.CLOBOL_05692	Single-stranded DNA-binding protein	NA
UHGV-1426132_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1426132_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1426132_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1426132_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1426132_9	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1426132_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1426132_11	PHROG	phrog_26861	NA	unknown function
UHGV-1426132_11	UniRef90	UniRef90_UPI001F3DE87F	single-stranded DNA-binding protein	NA
UHGV-1426132_11	eggNOG-mapper	411902.CLOBOL_05691	NA	NA
UHGV-1426132_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1426132_11	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1426132_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1426132_11	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1426132_13	PHROG	phrog_874	NA	unknown function
UHGV-1426132_13	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-1426132_13	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1426132_13	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1426132_14	PHROG	phrog_15198	NA	unknown function
UHGV-1426132_14	UniRef90	UniRef90_UPI001F178C7B	NA	NA
UHGV-1426132_14	Pfam	PF04448	NA	DUF551
UHGV-1426132_16	Structural annotation	NF008911	NA	NA
UHGV-1426132_17	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-1426132_19	PHROG	phrog_774	NA	unknown function
UHGV-1426132_19	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1426132_22	PHROG	phrog_2834	NA	unknown function
UHGV-1426132_22	Structural annotation	PF11331, TIGR02098	NA	NA
UHGV-1426132_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1426132_23	PHROG	phrog_1	integrase	integration and excision
UHGV-1426132_23	UniRef90	UniRef90_UPI001F2B52E5	tyrosine-type recombinase/integrase	NA
UHGV-1426132_23	eggNOG-mapper	411902.CLOBOL_05674	Belongs to the 'phage' integrase family	NA
UHGV-1426132_23	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1426132_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1426132_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1426132_23	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1426132_24	PHROG	phrog_25231	NA	unknown function
UHGV-1426132_24	eggNOG-mapper	411902.CLOBOL_05673	NA	NA
UHGV-1426132_24	Structural annotation	PF04936	NA	NA
UHGV-1426132_25	PHROG	phrog_1558	NA	unknown function
UHGV-1426132_25	UniRef90	UniRef90_A0A1C7GFB4	Helix-turn-helix domain-containing protein	NA
UHGV-1426132_25	eggNOG-mapper	1163671.JAGI01000002_gene3057	NA	NA
UHGV-1426132_25	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1426132_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1426132_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1426132_26	UniRef90	UniRef90_UPI001592B6B8	terminase small subunit	NA
UHGV-1426132_26	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-1426132_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1426132_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1426132_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1426132_26	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1426132_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1426132_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1426132_27	UniRef90	UniRef90_R0D1A4	PBSX family phage terminase, large subunit	NA
UHGV-1426132_27	eggNOG-mapper	610130.Closa_1390	Terminase RNAseH like domain	NA
UHGV-1426132_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1426132_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1426132_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1426132_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1426132_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1426132_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-1426132_28	UniRef90	UniRef90_R0BGN5	SPP1 family phage portal protein	NA
UHGV-1426132_28	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-1426132_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1426132_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1426132_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1426132_29	UniRef90	UniRef90_R0BG81	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-1426132_29	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-1426132_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1426132_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1426132_29	COG	COG2369	NA	NA
UHGV-1426132_29	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1426132_30	Structural annotation	PF11305, MF_01360, NF010236	NA	NA
UHGV-1426132_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1426132_32	UniRef90	UniRef90_D9R920	Minor structural GP20 protein	NA
UHGV-1426132_32	eggNOG-mapper	610130.Closa_1394	Phage minor structural protein GP20	NA
UHGV-1426132_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1426132_32	Structural annotation	PF06810	NA	NA
UHGV-1426132_33	PHROG	phrog_247	major head protein	head and packaging
UHGV-1426132_33	UniRef90	UniRef90_A0A3D0FFL5	Coat protein	NA
UHGV-1426132_33	eggNOG-mapper	1567014.A0A0A7RVZ1_9VIRU	NA	NA
UHGV-1426132_33	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1426132_34	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1426132_34	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-1426132_34	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-1426132_34	Structural annotation	PF05135	NA	NA
UHGV-1426132_35	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1426132_35	eggNOG-mapper	1121335.Clst_0394	NA	NA
UHGV-1426132_35	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1426132_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1426132_36	UniRef90	UniRef90_UPI00189B3EE0	HK97 gp10 family phage protein	NA
UHGV-1426132_36	eggNOG-mapper	203119.Cthe_2482	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1426132_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1426132_36	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1426132_37	PHROG	phrog_525	NA	unknown function
UHGV-1426132_37	UniRef90	UniRef90_A0A174IGV6	NA	NA
UHGV-1426132_37	eggNOG-mapper	318464.IO99_00610	NA	NA
UHGV-1426132_37	Pfam	PF20765	NA	DUF6838
UHGV-1426132_37	Structural annotation	PF20765	NA	NA