UHGV-1426252

Genome information

Genome length 32,904 bps

CDS count 56

Completeness 96.31% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1426252
vOTU ID	vOTU-066322
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0227862
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.62
Jumbo phage	No

Genome content
Genome length	32,904 bps
GC content	56.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.25%
Average CDS length	536.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1426252_2	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-1426252_3	Structural annotation	PF21279, NF040942	NA	NA
UHGV-1426252_5	KOfam	K14059	int; integrase	NA
UHGV-1426252_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1426252_5	UniRef90	UniRef90_A0A3E2U2B4	Site-specific integrase	NA
UHGV-1426252_5	eggNOG-mapper	718252.FP2_06900	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1426252_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1426252_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1426252_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1426252_5	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1426252_6	PHROG	phrog_22683	NA	unknown function
UHGV-1426252_6	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-1426252_6	eggNOG-mapper	1008453.HMPREF9957_0722	NA	NA
UHGV-1426252_6	AcrCatalog	cluster_3962	NA	NA
UHGV-1426252_6	Pfam	PF13783	NA	DUF4177
UHGV-1426252_6	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-1426252_7	PHROG	phrog_17982	NA	unknown function
UHGV-1426252_7	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-1426252_7	Pfam	PF14020	NA	DUF4236
UHGV-1426252_9	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1426252_9	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1426252_9	UniRef90	UniRef90_A0A3E2U313	Repressor LexA	NA
UHGV-1426252_9	eggNOG-mapper	748224.HMPREF9436_01793	NA	NA
UHGV-1426252_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1426252_9	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1426252_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1426252_9	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1426252_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1426252_10	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1426252_10	UniRef90	UniRef90_A0A3E2U242	Helix-turn-helix domain-containing protein	NA
UHGV-1426252_10	eggNOG-mapper	888060.HMPREF9081_1958	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1426252_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1426252_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1426252_13	Structural annotation	PF12957	NA	NA
UHGV-1426252_14	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-1426252_15	UniRef90	UniRef90_A0A3E2U219	DNA-binding protein	NA
UHGV-1426252_15	eggNOG-mapper	718252.FP2_06830	NA	NA
UHGV-1426252_15	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1426252_16	PHROG	phrog_37789	NA	unknown function
UHGV-1426252_24	Structural annotation	NF033787	NA	NA
UHGV-1426252_25	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1426252_25	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1426252_26	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1426252_26	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1426252_26	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1426252_28	PHROG	phrog_7566	NA	unknown function
UHGV-1426252_28	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1426252_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1426252_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1426252_29	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-1426252_29	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1426252_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1426252_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1426252_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1426252_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1426252_29	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1426252_30	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1426252_30	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-1426252_30	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-1426252_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1426252_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1426252_30	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-1426252_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1426252_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1426252_31	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-1426252_31	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-1426252_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1426252_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1426252_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-1426252_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1426252_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1426252_33	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1426252_33	UniRef90	UniRef90_A0A2V2GM11	Methyltransferase	NA
UHGV-1426252_33	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-1426252_33	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1426252_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1426252_33	COG	COG0863	DNA modification methylase	NA
UHGV-1426252_33	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1426252_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1426252_35	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-1426252_35	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-1426252_35	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1426252_35	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1426252_36	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1426252_36	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-1426252_36	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-1426252_37	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-1426252_37	Structural annotation	PF19962	NA	NA
UHGV-1426252_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1426252_38	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-1426252_38	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-1426252_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1426252_38	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1426252_39	PHROG	phrog_104	portal protein	head and packaging
UHGV-1426252_39	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-1426252_39	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1426252_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1426252_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1426252_40	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1426252_40	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-1426252_40	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-1426252_40	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1426252_42	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1426252_42	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-1426252_42	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1426252_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1426252_43	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-1426252_43	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-1426252_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1426252_43	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1426252_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-1426252_44	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-1426252_44	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-1426252_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1426252_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1426252_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1426252_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1426252_45	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1426252_45	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1426252_45	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1426252_45	Structural annotation	PF09355	NA	NA
UHGV-1426252_46	PHROG	phrog_501	head closure Hc1	connector
UHGV-1426252_46	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-1426252_46	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-1426252_46	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1426252_47	PHROG	phrog_387	neck protein	connector
UHGV-1426252_47	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-1426252_48	PHROG	phrog_123	tail terminator	connector
UHGV-1426252_48	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-1426252_48	Structural annotation	PF06141	NA	NA
UHGV-1426252_49	PHROG	phrog_117	major tail protein	tail
UHGV-1426252_49	UniRef90	UniRef90_A0A3E2U249	Phage tail protein	NA
UHGV-1426252_49	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-1426252_49	COG	COG5492	NA	NA
UHGV-1426252_49	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1426252_50	PHROG	phrog_1526	NA	unknown function
UHGV-1426252_50	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-1426252_51	PHROG	phrog_1633	NA	unknown function
UHGV-1426252_51	UniRef90	UniRef90_UPI001C392A95	NA	NA
UHGV-1426252_52	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1426252_52	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-1426252_52	COG	COG1511	NA	NA
UHGV-1426252_53	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-1426252_53	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1426252_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-1426252_53	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1426252_54	PHROG	phrog_3558	tail protein	tail
UHGV-1426252_54	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-1426252_54	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-1426252_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1426252_54	COG	COG4926	Phage-related protein	NA
UHGV-1426252_54	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1426252_56	PHROG	phrog_1658	NA	unknown function
UHGV-1426252_56	eggNOG-mapper	657322.FPR_13550	Bacterial Ig-like domain (group 2)	NA
UHGV-1426252_56	COG	COG5492	NA	NA