UHGV-1426369

Genome information

Genome length 22,853 bps

CDS count 42

Completeness 54.09% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-1426369
vOTU ID	vOTU-034852
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0167589
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.71
Jumbo phage	No

Genome content
Genome length	22,853 bps
GC content	53.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.45%
Average CDS length	500.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1426369_3	PHROG	phrog_8680	NA	unknown function
UHGV-1426369_3	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-1426369_3	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1426369_3	Pfam	PF14386	NA	DUF4417
UHGV-1426369_3	Structural annotation	PF14386	NA	NA
UHGV-1426369_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1426369_4	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1426369_4	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1426369_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1426369_4	COG	COG2369	NA	NA
UHGV-1426369_4	Structural annotation	PF06152	NA	NA
UHGV-1426369_5	Structural annotation	PF07258, MF_01194, TIGR02097	NA	NA
UHGV-1426369_6	Structural annotation	PF18152	NA	NA
UHGV-1426369_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1426369_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1426369_7	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-1426369_7	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-1426369_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1426369_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1426369_10	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-1426369_10	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1426369_10	Structural annotation	PF06810	NA	NA
UHGV-1426369_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-1426369_11	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1426369_11	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1426369_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1426369_11	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1426369_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1426369_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1426369_11	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1426369_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1426369_12	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1426369_13	PHROG	phrog_3366	NA	unknown function
UHGV-1426369_13	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1426369_13	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1426369_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1426369_14	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1426369_14	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1426369_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1426369_14	Structural annotation	PF11114	NA	NA
UHGV-1426369_15	PHROG	phrog_3266	tail completion	connector
UHGV-1426369_15	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-1426369_15	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1426369_15	Structural annotation	PF12691	NA	NA
UHGV-1426369_16	PHROG	phrog_3099	NA	unknown function
UHGV-1426369_16	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-1426369_16	Structural annotation	TIGR02126	NA	NA
UHGV-1426369_17	PHROG	phrog_11299	NA	unknown function
UHGV-1426369_17	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1426369_17	Structural annotation	PF10666	NA	NA
UHGV-1426369_18	PHROG	phrog_706	NA	unknown function
UHGV-1426369_18	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1426369_18	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1426369_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1426369_18	Structural annotation	PF06854	NA	NA
UHGV-1426369_19	PHROG	phrog_806	NA	unknown function
UHGV-1426369_19	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-1426369_19	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-1426369_19	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1426369_19	Pfam	PF11611	NA	DUF4352
UHGV-1426369_19	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-1426369_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1426369_20	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1426369_20	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1426369_20	COG	COG1511	NA	NA
UHGV-1426369_20	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-1426369_21	PHROG	phrog_1194	NA	unknown function
UHGV-1426369_21	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1426369_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1426369_22	PHROG	phrog_13879	NA	unknown function
UHGV-1426369_22	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-1426369_22	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1426369_24	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-1426369_24	PHROG	phrog_11157	NA	unknown function
UHGV-1426369_24	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-1426369_24	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-1426369_24	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1426369_24	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1426369_24	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1426369_24	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1426369_25	PHROG	phrog_18725	NA	unknown function
UHGV-1426369_25	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-1426369_25	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1426369_25	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1426369_27	PHROG	phrog_2295	NA	unknown function
UHGV-1426369_27	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1426369_27	Structural annotation	PF21722	NA	NA
UHGV-1426369_28	PHROG	phrog_2295	NA	unknown function
UHGV-1426369_28	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1426369_28	Structural annotation	PF21722	NA	NA
UHGV-1426369_33	PHROG	phrog_2310	NA	unknown function
UHGV-1426369_33	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-1426369_35	PHROG	phrog_4105	NA	unknown function
UHGV-1426369_35	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1426369_35	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-1426369_36	PHROG	phrog_1129	holin	lysis
UHGV-1426369_36	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-1426369_36	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1426369_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1426369_36	Structural annotation	PF06946	NA	NA
UHGV-1426369_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1426369_37	PHROG	phrog_435	endolysin	lysis
UHGV-1426369_37	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-1426369_37	eggNOG-mapper	398512.JQKC01000005_gene5470	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1426369_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1426369_37	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1426369_37	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1426369_39	PHROG	phrog_3754	NA	unknown function
UHGV-1426369_39	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1426369_40	PHROG	phrog_21718	NA	unknown function
UHGV-1426369_40	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1426369_41	PHROG	phrog_22984	NA	unknown function