UHGV-1426765

Genome information

Genome length 20,964 bps

CDS count 27

Completeness 56.36% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1426765
vOTU ID	vOTU-030159
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0153551
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.23
Jumbo phage	No

Genome content
Genome length	20,964 bps
GC content	50.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	93.48%
Average CDS length	729.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1426765_2	UniRef90	UniRef90_A0A351F9G2	RHH_1 domain-containing protein	NA
UHGV-1426765_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-1426765_3	Structural annotation	COG1859	NA	NA
UHGV-1426765_5	PHROG	phrog_263	holin	lysis
UHGV-1426765_5	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-1426765_5	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-1426765_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1426765_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1426765_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1426765_6	PHROG	phrog_9428	NA	unknown function
UHGV-1426765_6	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-1426765_6	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-1426765_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1426765_7	PHROG	phrog_435	endolysin	lysis
UHGV-1426765_7	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-1426765_7	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-1426765_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1426765_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1426765_7	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-1426765_8	PHROG	phrog_27545	NA	unknown function
UHGV-1426765_8	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-1426765_8	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1426765_10	Structural annotation	PF02973	NA	NA
UHGV-1426765_11	Structural annotation	PF10651, NF009453	NA	NA
UHGV-1426765_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1426765_13	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-1426765_13	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1426765_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1426765_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1426765_13	COG	COG4926	Phage-related protein	NA
UHGV-1426765_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1426765_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1426765_14	UniRef90	UniRef90_D6XZX5	Phage tail component	NA
UHGV-1426765_14	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-1426765_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-1426765_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1426765_15	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1426765_15	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-1426765_15	eggNOG-mapper	394503.Ccel_2825	tape measure	NA
UHGV-1426765_15	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-1426765_15	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1426765_16	PHROG	phrog_2115	tail protein	tail
UHGV-1426765_16	Structural annotation	PF11836	NA	NA
UHGV-1426765_17	PHROG	phrog_88	major tail protein	tail
UHGV-1426765_17	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-1426765_17	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-1426765_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1426765_17	COG	COG5492	NA	NA
UHGV-1426765_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1426765_18	PHROG	phrog_78	tail terminator	connector
UHGV-1426765_18	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-1426765_18	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1426765_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1426765_19	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-1426765_19	eggNOG-mapper	1235792.C808_03060	NA	NA
UHGV-1426765_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1426765_19	Structural annotation	TIGR01725	NA	NA
UHGV-1426765_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1426765_20	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-1426765_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1426765_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1426765_21	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-1426765_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1426765_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1426765_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1426765_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1426765_22	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-1426765_22	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-1426765_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1426765_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1426765_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1426765_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1426765_23	PHROG	phrog_16951	NA	unknown function
UHGV-1426765_23	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-1426765_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1426765_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-1426765_24	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-1426765_24	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-1426765_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1426765_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1426765_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1426765_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1426765_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1426765_25	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-1426765_25	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-1426765_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1426765_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1426765_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1426765_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1426765_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1426765_26	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-1426765_26	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-1426765_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1426765_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1426765_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1426765_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1426765_27	UniRef90	UniRef90_U5CG67	HNH endonuclease	NA
UHGV-1426765_27	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-1426765_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1426765_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1426765_27	Structural annotation	PF05766	NA	NA