UHGV-1426898

Genome information

Genome length 33,108 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-1426898
vOTU ID	vOTU-013008
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0228936
BioSample	SAMEA2738067
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.08
Jumbo phage	No

Genome content
Genome length	33,108 bps
GC content	50.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.80%
Average CDS length	621.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1426898_1	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1426898_1	eggNOG-mapper	596315.HMPREF0634_0383	DnaD domain protein	NA
UHGV-1426898_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1426898_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1426898_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1426898_4	Pfam	PF03837	RecT family	RecT
UHGV-1426898_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1426898_5	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-1426898_5	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1426898_5	UniRef90	UniRef90_A0A6J5N6Q9	Phage_rel_nuc, putative phage-type endonuclease	NA
UHGV-1426898_5	eggNOG-mapper	670292.JH26_14425	YqaJ-like viral recombinase domain	NA
UHGV-1426898_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1426898_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1426898_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1426898_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1426898_7	UniRef90	UniRef90_A0A857VC94	Single-stranded DNA-binding protein	NA
UHGV-1426898_7	eggNOG-mapper	546271.Selsp_1347	Single-strand binding protein family	NA
UHGV-1426898_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1426898_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1426898_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1426898_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1426898_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1426898_9	PHROG	phrog_824	NA	unknown function
UHGV-1426898_9	UniRef90	UniRef90_A0A660LVV4	VRR-NUC domain-containing protein	NA
UHGV-1426898_9	eggNOG-mapper	469378.Ccur_02760	VRR-NUC domain	NA
UHGV-1426898_9	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1426898_12	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1426898_12	UniRef90	UniRef90_A0A2G9YHR4	ParB domain-containing protein	NA
UHGV-1426898_12	eggNOG-mapper	357276.EL88_08430	ParB-like nuclease domain	NA
UHGV-1426898_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1426898_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1426898_13	KOfam	K24451	zim; modification methylase	NA
UHGV-1426898_13	PHROG	phrog_12517	NA	unknown function
UHGV-1426898_13	UniRef90	UniRef90_A0A6G7CN40	ParB N-terminal domain-containing protein	NA
UHGV-1426898_13	eggNOG-mapper	1121097.JCM15093_3233	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1426898_13	PADLOC	MTase_II_00137	Type II methyltransferase	RM
UHGV-1426898_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1426898_13	COG	COG0863	DNA modification methylase	NA
UHGV-1426898_16	Structural annotation	PF16857	NA	NA
UHGV-1426898_20	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-1426898_20	PHROG	phrog_1569	NA	unknown function
UHGV-1426898_20	UniRef90	UniRef90_A0A3D2E2D8	S-adenosylmethionine synthetase	NA
UHGV-1426898_20	eggNOG-mapper	1120978.KB894081_gene101	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-1426898_20	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-1426898_20	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-1426898_20	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-1426898_21	PHROG	phrog_29438	NA	unknown function
UHGV-1426898_25	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-1426898_25	UniRef90	UniRef90_UPI001F475B4B	phage terminase large subunit	NA
UHGV-1426898_25	eggNOG-mapper	469618.FVAG_00794	TIGRFAM Phage	NA
UHGV-1426898_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1426898_25	COG	COG5410	NA	NA
UHGV-1426898_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1426898_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-1426898_26	UniRef90	UniRef90_A0A7W4DHI0	Phage portal protein	NA
UHGV-1426898_26	eggNOG-mapper	562981.HMPREF0428_01823	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1426898_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1426898_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1426898_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1426898_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1426898_27	UniRef90	UniRef90_A0A7W4DSA2	Minor capsid protein	NA
UHGV-1426898_27	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-1426898_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1426898_27	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-1426898_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1426898_27	COG	COG2369	NA	NA
UHGV-1426898_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1426898_29	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1426898_29	UniRef90	UniRef90_A0A7W4E738	NA	NA
UHGV-1426898_29	eggNOG-mapper	642492.Clole_0971	NA	NA
UHGV-1426898_29	Pfam	PF14265	NA	DUF4355
UHGV-1426898_29	Structural annotation	PF14265	NA	NA
UHGV-1426898_30	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-1426898_30	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1426898_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1426898_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1426898_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1426898_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1426898_34	UniRef90	UniRef90_UPI001C11CA22	HK97 gp10 family phage protein	NA
UHGV-1426898_34	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1426898_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1426898_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1426898_34	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1426898_35	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1426898_36	PHROG	phrog_158	major tail protein	tail
UHGV-1426898_36	UniRef90	UniRef90_UPI000210B507	phage tail tube protein	NA
UHGV-1426898_36	eggNOG-mapper	650150.ERH_0618	Phage tail tube protein	NA
UHGV-1426898_36	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-1426898_36	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-1426898_37	Structural annotation	PF19591	NA	NA
UHGV-1426898_38	PHROG	phrog_35723	NA	unknown function
UHGV-1426898_38	UniRef90	UniRef90_UPI00135AD929	tape measure protein	NA
UHGV-1426898_38	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-1426898_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1426898_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1426898_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1426898_38	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1426898_39	PHROG	phrog_1194	NA	unknown function
UHGV-1426898_39	eggNOG-mapper	1229517.AMFD01000023_gene1305	NA	NA
UHGV-1426898_39	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-1426898_40	PHROG	phrog_2929	tail fiber protein	tail
UHGV-1426898_40	UniRef90	UniRef90_A0A7V8A6H9	PblB	NA
UHGV-1426898_40	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-1426898_40	Structural annotation	PF04862, PF05113, NF033848, NF033675, COG4379	NA	NA
UHGV-1426898_41	PHROG	phrog_372	tail protein	tail
UHGV-1426898_41	UniRef90	UniRef90_UPI0004693702	NA	NA
UHGV-1426898_41	eggNOG-mapper	1416759.AYMR01000009_gene3061	NA	NA
UHGV-1426898_41	Pfam	PF05895	NA	DUF859
UHGV-1426898_45	PHROG	phrog_7698	endolysin	lysis
UHGV-1426898_45	eggNOG-mapper	1235796.C815_01769	hydrolase, family 25	NA
UHGV-1426898_45	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1426898_45	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1426898_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36