UHGV-1427073

Genome information

Genome length 20,890 bps

CDS count 21

Completeness 65.26% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1427073
vOTU ID	vOTU-034864
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0152969
BioSample	SAMEA2738149
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.22
Jumbo phage	No

Genome content
Genome length	20,890 bps
GC content	41.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	95.57%
Average CDS length	954.14 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1427073_1	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1427073_1	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1427073_1	UniRef90	UniRef90_I1ZL60	DNA polymerase III subunit alpha	NA
UHGV-1427073_1	eggNOG-mapper	888048.HMPREF8577_0252	DNA polymerase	NA
UHGV-1427073_1	Pfam	PF02811	PHP domain	PHP
UHGV-1427073_1	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1427073_1	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1427073_1	NCBIFam	NF005582.0	DNA polymerase III subunit alpha	NA
UHGV-1427073_1	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1427073_2	PHROG	phrog_21909	NA	unknown function
UHGV-1427073_2	UniRef90	UniRef90_UPI00094EEBC2	collagen-like protein	NA
UHGV-1427073_2	eggNOG-mapper	999425.HMPREF9186_02055	NA	NA
UHGV-1427073_3	PHROG	phrog_1309	endolysin	lysis
UHGV-1427073_3	UniRef90	UniRef90_A0A1F0KA16	Cell wall hydrolase	NA
UHGV-1427073_3	eggNOG-mapper	1316408.HSISM1_1251	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1427073_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-1427073_3	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1427073_3	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1427073_3	Structural annotation	PF08460, PF05257, NF041850, COG3942	NA	NA
UHGV-1427073_4	PHROG	phrog_608	holin	lysis
UHGV-1427073_4	UniRef90	UniRef90_T0TXN2	Phage holin	NA
UHGV-1427073_4	eggNOG-mapper	1321372.AQQB01000060_gene79	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1427073_4	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1427073_4	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1427073_5	PHROG	phrog_199	holin	lysis
UHGV-1427073_5	UniRef90	UniRef90_A0A7X2X3Q0	Holin	NA
UHGV-1427073_5	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-1427073_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1427073_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1427073_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1427073_6	PHROG	phrog_1554	NA	unknown function
UHGV-1427073_6	UniRef90	UniRef90_A0A4V0EM35	NA	NA
UHGV-1427073_6	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-1427073_6	Structural annotation	PF07104	NA	NA
UHGV-1427073_8	PHROG	phrog_2189	tail protein	tail
UHGV-1427073_8	UniRef90	UniRef90_T0U481	Phage endopeptidase	NA
UHGV-1427073_8	eggNOG-mapper	1316408.HSISM1_1246	Phage minor structural protein	NA
UHGV-1427073_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1427073_8	COG	COG1511	NA	NA
UHGV-1427073_8	Structural annotation	PF14594, PF00629, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-1427073_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1427073_9	UniRef90	UniRef90_UPI001CC00BD7	phage tail protein	NA
UHGV-1427073_9	eggNOG-mapper	1316408.HSISM1_1245	NA	NA
UHGV-1427073_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1427073_10	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1427073_10	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1427073_10	UniRef90	UniRef90_A0A1F0KCN3	Phage tail tape measure protein	NA
UHGV-1427073_10	eggNOG-mapper	1316408.HSISM1_1244	Phage tail tape measure protein	NA
UHGV-1427073_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1427073_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1427073_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1427073_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1427073_11	PHROG	phrog_709	NA	unknown function
UHGV-1427073_11	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-1427073_11	eggNOG-mapper	1316408.HSISM1_1243	NA	NA
UHGV-1427073_11	Structural annotation	PF11836	NA	NA
UHGV-1427073_12	PHROG	phrog_88	major tail protein	tail
UHGV-1427073_12	UniRef90	UniRef90_T0U4F0	Phage major tail protein	NA
UHGV-1427073_12	eggNOG-mapper	1316408.HSISM1_1242	phage major tail protein, phi13 family	NA
UHGV-1427073_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1427073_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1427073_13	PHROG	phrog_78	tail terminator	connector
UHGV-1427073_13	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-1427073_13	eggNOG-mapper	1316408.HSISM1_1241	NA	NA
UHGV-1427073_13	Structural annotation	PF20765	NA	NA
UHGV-1427073_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1427073_14	UniRef90	UniRef90_A0A414CIF4	HK97 gp10 family phage protein	NA
UHGV-1427073_14	eggNOG-mapper	1316408.HSISM1_1058	NA	NA
UHGV-1427073_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1427073_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1427073_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1427073_15	UniRef90	UniRef90_A0A414CIH3	Phage head closure protein	NA
UHGV-1427073_15	eggNOG-mapper	1316408.HSISM1_1057	Phage head-tail joining protein	NA
UHGV-1427073_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1427073_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1427073_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1427073_16	PHROG	phrog_2550	NA	unknown function
UHGV-1427073_16	UniRef90	UniRef90_T0U4H0	Orf46	NA
UHGV-1427073_16	eggNOG-mapper	644007.C5J965_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-1427073_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1427073_17	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-1427073_17	UniRef90	UniRef90_A0A0P0N6K2	Phage transcriptional terminator	NA
UHGV-1427073_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1427073_18	UniRef90	UniRef90_A0A4D6B1V9	Capsid protein	NA
UHGV-1427073_18	eggNOG-mapper	1316408.HSISM1_1054	capsid protein	NA
UHGV-1427073_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1427073_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1427073_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1427073_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1427073_19	KOfam	K06904	NA	NA
UHGV-1427073_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1427073_19	UniRef90	UniRef90_A0A414CJ71	HK97 family phage prohead protease	NA
UHGV-1427073_19	eggNOG-mapper	1316408.HSISM1_1053	Caudovirus prohead serine protease	NA
UHGV-1427073_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1427073_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1427073_19	COG	COG3740	Phage head maturation protease	NA
UHGV-1427073_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1427073_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1427073_20	UniRef90	UniRef90_A0A4D6B580	Portal (Connector) protein	NA
UHGV-1427073_20	eggNOG-mapper	1316408.HSISM1_1052	Phage portal protein	NA
UHGV-1427073_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1427073_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1427073_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1427073_20	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1427073_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1427073_21	UniRef90	UniRef90_A0A7G1JM49	Terminase	NA
UHGV-1427073_21	eggNOG-mapper	1316408.HSISM1_1051	Terminase	NA
UHGV-1427073_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1427073_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1427073_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1427073_21	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA