UHGV-1427600

Genome information

Genome length 21,715 bps

CDS count 26

Completeness 62.39% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1427600
vOTU ID	vOTU-034871
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0159236
BioSample	SAMEA2738091
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.5
Jumbo phage	No

Genome content
Genome length	21,715 bps
GC content	40.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	96.69%
Average CDS length	811.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1427600_1	PHROG	phrog_4455	NA	unknown function
UHGV-1427600_1	UniRef90	UniRef90_A0A4J2CRE4	NA	NA
UHGV-1427600_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1427600_2	UniRef90	UniRef90_UPI00094E52C3	NA	NA
UHGV-1427600_2	eggNOG-mapper	1321372.AQQB01000060_gene55	NA	NA
UHGV-1427600_2	Pfam	PF07374	NA	DUF1492
UHGV-1427600_2	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1427600_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1427600_3	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-1427600_3	UniRef90	UniRef90_UPI001C47DEB7	terminase small subunit	NA
UHGV-1427600_3	eggNOG-mapper	764291.STRUR_2109	NA	NA
UHGV-1427600_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1427600_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1427600_4	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1427600_4	UniRef90	UniRef90_G5KEP9	Phage terminase, large subunit, PBSX family	NA
UHGV-1427600_4	eggNOG-mapper	1035189.HMPREF9954_0302	Terminase-like family	NA
UHGV-1427600_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1427600_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1427600_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1427600_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-1427600_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1427600_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-1427600_5	UniRef90	UniRef90_UPI00094E2DA3	phage portal protein	NA
UHGV-1427600_5	eggNOG-mapper	764291.STRUR_2107	portal protein	NA
UHGV-1427600_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1427600_5	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1427600_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1427600_6	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1427600_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1427600_6	UniRef90	UniRef90_A0A4D6B3C1	Minor capsid protein	NA
UHGV-1427600_6	eggNOG-mapper	1035189.HMPREF9954_0304	Phage minor capsid protein 2	NA
UHGV-1427600_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1427600_6	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1427600_6	COG	COG2369	NA	NA
UHGV-1427600_6	Structural annotation	PF06152, PF03496, NF040688	NA	NA
UHGV-1427600_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1427600_8	UniRef90	UniRef90_UPI00094F12CC	phage scaffolding protein	NA
UHGV-1427600_8	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-1427600_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1427600_8	Structural annotation	PF06810	NA	NA
UHGV-1427600_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-1427600_9	UniRef90	UniRef90_A0A1X1KL37	N4-gp56 family major capsid protein	NA
UHGV-1427600_9	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-1427600_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1427600_10	PHROG	phrog_10018	NA	unknown function
UHGV-1427600_11	PHROG	phrog_2910	NA	unknown function
UHGV-1427600_11	UniRef90	UniRef90_F9PZ37	Conserved domain protein	NA
UHGV-1427600_11	Structural annotation	PF20873	NA	NA
UHGV-1427600_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1427600_12	UniRef90	UniRef90_A0A501VK26	NA	NA
UHGV-1427600_12	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-1427600_13	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1427600_13	UniRef90	UniRef90_UPI00094E7DA0	putative minor capsid protein	NA
UHGV-1427600_13	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1427600_13	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1427600_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1427600_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1427600_14	UniRef90	UniRef90_UPI00094F08CC	minor capsid protein	NA
UHGV-1427600_14	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-1427600_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1427600_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1427600_15	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1427600_15	UniRef90	UniRef90_UPI00094E56EF	minor capsid protein	NA
UHGV-1427600_15	eggNOG-mapper	764299.STRIC_2534	Minor capsid protein from bacteriophage	NA
UHGV-1427600_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1427600_15	Structural annotation	PF12691	NA	NA
UHGV-1427600_16	PHROG	phrog_820	major tail protein	tail
UHGV-1427600_16	UniRef90	UniRef90_UPI00094E9B67	phage tail protein	NA
UHGV-1427600_16	eggNOG-mapper	764291.STRUR_2095	NA	NA
UHGV-1427600_16	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-1427600_17	PHROG	phrog_1061	NA	unknown function
UHGV-1427600_17	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-1427600_17	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1427600_17	Structural annotation	PF10666	NA	NA
UHGV-1427600_18	PHROG	phrog_706	NA	unknown function
UHGV-1427600_18	UniRef90	UniRef90_UPI00094E88FB	Gp15 family bacteriophage protein	NA
UHGV-1427600_18	eggNOG-mapper	1035189.HMPREF9954_0316	Bacteriophage Gp15 protein	NA
UHGV-1427600_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1427600_18	Structural annotation	PF06854	NA	NA
UHGV-1427600_19	PHROG	phrog_1204	tail protein	tail
UHGV-1427600_19	UniRef90	UniRef90_UPI00094EDD5E	tape measure protein	NA
UHGV-1427600_19	eggNOG-mapper	1035189.HMPREF9954_0317	phage tail tape measure protein	NA
UHGV-1427600_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1427600_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1427600_19	COG	COG5412	Phage-related protein	NA
UHGV-1427600_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1427600_20	UniRef90	UniRef90_UPI00094F352E	phage tail family protein	NA
UHGV-1427600_20	eggNOG-mapper	173707.Q938K2_9CAUD	Phage tail protein	NA
UHGV-1427600_20	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1427600_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1427600_21	PHROG	phrog_2270	NA	unknown function
UHGV-1427600_21	UniRef90	UniRef90_UPI0012BD39E8	carbohydrate binding domain-containing protein	NA
UHGV-1427600_21	eggNOG-mapper	764299.STRIC_2540	NA	NA
UHGV-1427600_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1427600_21	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1427600_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1427600_21	COG	COG4926	Phage-related protein	NA
UHGV-1427600_21	Structural annotation	PF14594, PF07902, TIGR01665, COG4926	NA	NA
UHGV-1427600_23	PHROG	phrog_1554	NA	unknown function
UHGV-1427600_23	UniRef90	UniRef90_A0A359YI08	NA	NA
UHGV-1427600_23	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-1427600_23	Structural annotation	PF07104	NA	NA
UHGV-1427600_24	PHROG	phrog_4257	NA	unknown function
UHGV-1427600_24	UniRef90	UniRef90_A0A139QKW6	NA	NA
UHGV-1427600_24	eggNOG-mapper	997830.HMPREF1124_0612	NA	NA
UHGV-1427600_25	PHROG	phrog_33625	holin	lysis
UHGV-1427600_25	UniRef90	UniRef90_UPI00094E4C5E	phage holin	NA
UHGV-1427600_25	eggNOG-mapper	644007.C5J977_9CAUD	Bacteriophage holin	NA
UHGV-1427600_25	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1427600_25	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1427600_25	Structural annotation	COG5546	NA	NA
UHGV-1427600_26	PHROG	phrog_32123	NA	unknown function
UHGV-1427600_26	UniRef90	UniRef90_UPI00094EEBC2	collagen-like protein	NA
UHGV-1427600_26	eggNOG-mapper	997830.HMPREF1124_0614	Collagen triple helix repeat (20 copies)	NA
UHGV-1427600_26	COG	COG3468	Autotransporter adhesin AidA	NA