UHGV-1427602

Genome information

Genome length 21,716 bps

CDS count 27

Completeness 60.38% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-1427602
vOTU ID	vOTU-025170
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0159245
BioSample	SAMEA2738079
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.57
Jumbo phage	No

Genome content
Genome length	21,716 bps
GC content	41.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	96.47%
Average CDS length	778.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1427602_1	PHROG	phrog_13906	NA	unknown function
UHGV-1427602_1	UniRef90	UniRef90_UPI0012BBEF43	NA	NA
UHGV-1427602_1	Pfam	PF07116	NA	DUF1372
UHGV-1427602_2	PHROG	phrog_98	NA	unknown function
UHGV-1427602_2	UniRef90	UniRef90_A0A7X1QWD8	YopX domain-containing protein	NA
UHGV-1427602_2	eggNOG-mapper	482234.SCAZ3_03630	YopX protein	NA
UHGV-1427602_2	Pfam	PF09643	YopX protein	YopX
UHGV-1427602_2	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1427602_2	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1427602_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1427602_3	UniRef90	UniRef90_A0A116MQC2	NA	NA
UHGV-1427602_3	eggNOG-mapper	1321372.AQQB01000060_gene55	NA	NA
UHGV-1427602_3	Pfam	PF07374	NA	DUF1492
UHGV-1427602_3	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1427602_4	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1427602_4	UniRef90	UniRef90_A0A0E4CTN9	Phage terminase small subunit	NA
UHGV-1427602_4	eggNOG-mapper	1035189.HMPREF9954_0301	DNA packaging	NA
UHGV-1427602_4	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1427602_4	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1427602_4	COG	COG5484	NA	NA
UHGV-1427602_4	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-1427602_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1427602_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1427602_5	UniRef90	UniRef90_G5KEP9	Phage terminase, large subunit, PBSX family	NA
UHGV-1427602_5	eggNOG-mapper	764291.STRUR_2108	Phage terminase, large subunit	NA
UHGV-1427602_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1427602_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1427602_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1427602_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-1427602_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1427602_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-1427602_6	UniRef90	UniRef90_F9PZ31	Phage portal protein gp6-like protein	NA
UHGV-1427602_6	eggNOG-mapper	1035189.HMPREF9954_0303	portal protein	NA
UHGV-1427602_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1427602_6	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1427602_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1427602_7	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1427602_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1427602_7	UniRef90	UniRef90_UPI001C1F0E28	capsid protein	NA
UHGV-1427602_7	eggNOG-mapper	764291.STRUR_2106	Phage minor capsid protein 2	NA
UHGV-1427602_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1427602_7	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1427602_7	COG	COG2369	NA	NA
UHGV-1427602_7	Structural annotation	PF06152, PF03496, NF040688	NA	NA
UHGV-1427602_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1427602_9	UniRef90	UniRef90_A0A1F0C2D9	Scaffolding protein	NA
UHGV-1427602_9	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-1427602_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1427602_9	Structural annotation	PF06810	NA	NA
UHGV-1427602_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-1427602_10	UniRef90	UniRef90_A0A1X1KL37	N4-gp56 family major capsid protein	NA
UHGV-1427602_10	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-1427602_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1427602_11	PHROG	phrog_10018	NA	unknown function
UHGV-1427602_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1427602_13	UniRef90	UniRef90_A0A150NS05	NA	NA
UHGV-1427602_13	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-1427602_14	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1427602_14	UniRef90	UniRef90_UPI0007693BA3	putative minor capsid protein	NA
UHGV-1427602_14	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1427602_14	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1427602_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1427602_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1427602_15	UniRef90	UniRef90_A0A3G8F518	Putative minor capsid protein	NA
UHGV-1427602_15	eggNOG-mapper	537874.B3GW08_9CAUD	Minor capsid protein	NA
UHGV-1427602_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1427602_15	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1427602_16	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1427602_16	UniRef90	UniRef90_A0A150NRZ8	Phage minor capsid protein	NA
UHGV-1427602_16	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1427602_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1427602_16	Structural annotation	PF12691	NA	NA
UHGV-1427602_17	PHROG	phrog_820	major tail protein	tail
UHGV-1427602_17	UniRef90	UniRef90_A0A4D6AMQ2	Major tail shaft protein	NA
UHGV-1427602_17	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-1427602_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1427602_18	PHROG	phrog_1061	NA	unknown function
UHGV-1427602_18	UniRef90	UniRef90_A0A150NRZ7	NA	NA
UHGV-1427602_18	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1427602_18	Structural annotation	PF10666	NA	NA
UHGV-1427602_19	PHROG	phrog_706	NA	unknown function
UHGV-1427602_19	UniRef90	UniRef90_A0A150NS09	NA	NA
UHGV-1427602_19	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1427602_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1427602_19	Structural annotation	PF06854	NA	NA
UHGV-1427602_20	PHROG	phrog_1204	tail protein	tail
UHGV-1427602_20	UniRef90	UniRef90_A0A150NRZ3	Phage minor tail protein	NA
UHGV-1427602_20	eggNOG-mapper	1277892.M1HNU8_9CAUD	NA	NA
UHGV-1427602_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1427602_21	UniRef90	UniRef90_A0A150NRZ5	Prophage Lp1 protein 51	NA
UHGV-1427602_21	eggNOG-mapper	646413.C5IUK4_9CAUD	NA	NA
UHGV-1427602_21	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1427602_22	PHROG	phrog_3558	tail protein	tail
UHGV-1427602_22	UniRef90	UniRef90_UPI0010CFFB68	phage tail protein	NA
UHGV-1427602_22	eggNOG-mapper	646413.C5IUK5_9CAUD	peptidoglycan catabolic process	NA
UHGV-1427602_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1427602_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1427602_23	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1427602_23	PHROG	phrog_18023	tail fiber protein	tail
UHGV-1427602_23	UniRef90	UniRef90_A0A1F0NBV2	SGNH_hydro domain-containing protein	NA
UHGV-1427602_23	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1427602_23	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1427602_23	Structural annotation	PF13472, PF21254, NF007819, COG2755	NA	NA
UHGV-1427602_24	PHROG	phrog_21950	NA	unknown function
UHGV-1427602_24	UniRef90	UniRef90_UPI00085BE04A	BhlA/UviB family holin-like peptide	NA
UHGV-1427602_24	eggNOG-mapper	1214217.ALNF01000014_gene1360	NA	NA
UHGV-1427602_24	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-1427602_25	PHROG	phrog_33625	holin	lysis
UHGV-1427602_25	UniRef90	UniRef90_A0A1F0TGD2	Holin	NA
UHGV-1427602_25	eggNOG-mapper	1297534.CAUJ01000005_gene166	Holin, phage phi LC3 family	NA
UHGV-1427602_25	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1427602_25	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1427602_25	COG	COG5546	NA	NA
UHGV-1427602_25	Structural annotation	COG5546	NA	NA
UHGV-1427602_26	KOfam	K07273	acm; lysozyme	NA
UHGV-1427602_26	PHROG	phrog_6745	endolysin	lysis
UHGV-1427602_26	UniRef90	UniRef90_UPI001459BF86	lysozyme	NA
UHGV-1427602_26	eggNOG-mapper	1297534.CAUJ01000005_gene165	Glycosyl hydrolases family 25	NA
UHGV-1427602_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1427602_26	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1427602_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1427602_26	Structural annotation	PF01183, PF19127, TIGR04035, COG5263, COG3757	NA	NA
UHGV-1427602_27	KOfam	K02245	comGC; competence protein ComGC	NA
UHGV-1427602_27	UniRef90	UniRef90_E0PTB4	Prepilin-type cleavage/methylation N-terminal domain protein	NA
UHGV-1427602_27	eggNOG-mapper	864567.HMPREF8571_1781	Pfam:N_methyl_2	NA
UHGV-1427602_27	NCBIFam	NF040999.1	competence type IV pilus major pilin ComGC	NA
UHGV-1427602_27	COG	COG4537	Competence protein ComGC	NA
UHGV-1427602_27	Structural annotation	NF040999, COG4537	NA	NA