UHGV-1427832

Genome information

vOTU vOTU-019069

Genome length 24,173 bps

CDS count 44

Completeness 68.39% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1427832
vOTU ID	vOTU-019069
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0176694
BioSample	SAMEA2161876
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.83
Jumbo phage	No

Genome content
Genome length	24,173 bps
GC content	45.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.11%
Average CDS length	514.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1427832_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1427832_1	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1427832_1	UniRef90	UniRef90_A0A3R7C0Y2	XRE family transcriptional regulator	NA
UHGV-1427832_1	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-1427832_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1427832_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1427832_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1427832_2	PHROG	phrog_2104	NA	unknown function
UHGV-1427832_2	UniRef90	UniRef90_R6BYZ9	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-1427832_2	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-1427832_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1427832_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1427832_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1427832_5	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-1427832_5	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-1427832_5	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-1427832_5	Pfam	PF11195	NA	DUF2829
UHGV-1427832_5	Structural annotation	PF11195	NA	NA
UHGV-1427832_6	PHROG	phrog_750	NA	unknown function
UHGV-1427832_6	eggNOG-mapper	1231377.C426_1696	NA	NA
UHGV-1427832_10	Structural annotation	PF09035	NA	NA
UHGV-1427832_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1427832_13	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-1427832_13	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-1427832_13	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1427832_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1427832_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1427832_14	UniRef90	UniRef90_R6CVM1	RNase H type-1 domain-containing protein	NA
UHGV-1427832_14	eggNOG-mapper	1235793.C809_01903	RNase H	NA
UHGV-1427832_14	Pfam	PF00075	RNase H	RNase_H
UHGV-1427832_14	COG	COG0328	Ribonuclease HI	NA
UHGV-1427832_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1427832_15	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-1427832_16	PHROG	phrog_8470	NA	unknown function
UHGV-1427832_16	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-1427832_16	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-1427832_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1427832_16	Structural annotation	PF14284	NA	NA
UHGV-1427832_17	PHROG	phrog_15077	NA	unknown function
UHGV-1427832_17	UniRef90	UniRef90_UPI0019165AFE	NA	NA
UHGV-1427832_17	eggNOG-mapper	1235793.C809_01908	NA	NA
UHGV-1427832_17	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1427832_18	PHROG	phrog_24368	NA	unknown function
UHGV-1427832_18	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-1427832_19	PHROG	phrog_7566	NA	unknown function
UHGV-1427832_19	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-1427832_20	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA
UHGV-1427832_22	UniRef90	UniRef90_UPI00110589E2	ASCH domain-containing protein	NA
UHGV-1427832_22	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-1427832_22	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1427832_23	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-1427832_23	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1427832_25	PHROG	phrog_874	NA	unknown function
UHGV-1427832_25	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1427832_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1427832_26	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1427832_26	UniRef90	UniRef90_R6C1K8	HTH cro/C1-type domain-containing protein	NA
UHGV-1427832_26	eggNOG-mapper	1048834.TC41_1894	sequence-specific DNA binding	NA
UHGV-1427832_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1427832_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1427832_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1427832_27	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1427832_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1427832_27	UniRef90	UniRef90_R6C8X0	HTH-type transcriptional regulator AnsR family protein	NA
UHGV-1427832_27	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-1427832_27	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1427832_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1427832_27	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1427832_28	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-1427832_28	UniRef90	UniRef90_R6BYX5	Toxin-antitoxin system toxin component Bro family	NA
UHGV-1427832_28	eggNOG-mapper	1235798.C817_03462	ORF6N domain	NA
UHGV-1427832_28	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1427832_28	Structural annotation	PF10543, PF15188, MF_01506, TIGR02681, COG3646	NA	NA
UHGV-1427832_30	UniRef90	UniRef90_R6CCZ5	Methyl-accepting chemotaxis protein	NA
UHGV-1427832_30	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-1427832_30	Structural annotation	NF008671, COG4710	NA	NA
UHGV-1427832_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1427832_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1427832_31	UniRef90	UniRef90_R6C1K3	HNH endonuclease domain protein	NA
UHGV-1427832_31	eggNOG-mapper	1295642.H839_15988	HNH nucleases	NA
UHGV-1427832_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1427832_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1427832_32	PHROG	phrog_1066	NA	unknown function
UHGV-1427832_32	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-1427832_32	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1427832_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1427832_33	UniRef90	UniRef90_R6BYX0	Terminase	NA
UHGV-1427832_33	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1427832_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1427832_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1427832_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1427832_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1427832_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-1427832_34	UniRef90	UniRef90_R6CVK3	HK97 family phage portal protein	NA
UHGV-1427832_34	eggNOG-mapper	457415.HMPREF1006_01804	Portal protein	NA
UHGV-1427832_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1427832_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1427832_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1427832_35	KOfam	K06904	NA	NA
UHGV-1427832_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1427832_35	UniRef90	UniRef90_R6CCZ0	Phage prohead protease HK97 family	NA
UHGV-1427832_35	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-1427832_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1427832_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1427832_35	COG	COG3740	Phage head maturation protease	NA
UHGV-1427832_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1427832_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-1427832_36	UniRef90	UniRef90_UPI001C038412	phage major capsid protein	NA
UHGV-1427832_36	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1427832_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1427832_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1427832_36	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1427832_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1427832_38	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1427832_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1427832_39	UniRef90	UniRef90_R6CVJ7	HK97 gp10 family phage protein	NA
UHGV-1427832_39	eggNOG-mapper	1235793.C809_01923	NA	NA
UHGV-1427832_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1427832_39	Structural annotation	TIGR01725	NA	NA
UHGV-1427832_40	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1427832_41	PHROG	phrog_88	major tail protein	tail
UHGV-1427832_41	UniRef90	UniRef90_R6C1J4	Phage major tail protein phi13 family	NA
UHGV-1427832_41	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-1427832_41	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-1427832_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1427832_41	COG	COG5492	NA	NA
UHGV-1427832_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1427832_42	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-1427832_42	Structural annotation	PF11836	NA	NA
UHGV-1427832_44	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1427832_44	UniRef90	UniRef90_A0A059N3D7	Phage tail tape measure protein, TP901 family	NA
UHGV-1427832_44	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-1427832_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1427832_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1427832_44	COG	COG5283	Phage-related tail protein	NA