UHGV-1427891

Genome information

Genome length 21,956 bps

CDS count 23

Completeness 61.24% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1427891
vOTU ID	vOTU-029685
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0161018
BioSample	SAMEA2580031
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.55
Jumbo phage	No

Genome content
Genome length	21,956 bps
GC content	42.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	95.88%
Average CDS length	918.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1427891_1	PHROG	phrog_4257	NA	unknown function
UHGV-1427891_1	UniRef90	UniRef90_A0A139QKW6	NA	NA
UHGV-1427891_1	eggNOG-mapper	997830.HMPREF1124_0612	NA	NA
UHGV-1427891_2	PHROG	phrog_1554	NA	unknown function
UHGV-1427891_2	UniRef90	UniRef90_UPI001B9C9A73	NA	NA
UHGV-1427891_2	eggNOG-mapper	1000588.HMPREF9965_1687	NA	NA
UHGV-1427891_2	Pfam	PF07104	NA	DUF1366
UHGV-1427891_2	Structural annotation	PF07104	NA	NA
UHGV-1427891_3	PHROG	phrog_372	tail protein	tail
UHGV-1427891_3	UniRef90	UniRef90_UPI001C1EAC00	NA	NA
UHGV-1427891_3	eggNOG-mapper	1035189.HMPREF9954_0321	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1427891_3	Pfam	PF05895	NA	DUF859
UHGV-1427891_3	COG	COG4675	Phage tail collar domain	NA
UHGV-1427891_3	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1427891_4	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1427891_4	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1427891_4	UniRef90	UniRef90_UPI000F83ACE4	phage tail protein	NA
UHGV-1427891_4	eggNOG-mapper	1035189.HMPREF9954_0320	Collagen triple helix repeat (20 copies)	NA
UHGV-1427891_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1427891_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1427891_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1427891_4	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1427891_4	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-1427891_5	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1427891_5	UniRef90	UniRef90_A0A1X1KL48	Phage tail protein	NA
UHGV-1427891_5	eggNOG-mapper	1282664.H354_07740	Phage tail protein	NA
UHGV-1427891_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1427891_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1427891_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-1427891_5	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1427891_6	PHROG	phrog_1204	tail protein	tail
UHGV-1427891_6	UniRef90	UniRef90_A0A3R9M3X1	TMP_3 domain-containing protein	NA
UHGV-1427891_6	eggNOG-mapper	1035189.HMPREF9954_0317	phage tail tape measure protein	NA
UHGV-1427891_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1427891_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1427891_6	COG	COG5412	Phage-related protein	NA
UHGV-1427891_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1427891_7	PHROG	phrog_706	NA	unknown function
UHGV-1427891_7	UniRef90	UniRef90_F9PZ44	Bacteriophage Gp15 protein	NA
UHGV-1427891_7	eggNOG-mapper	1035189.HMPREF9954_0316	Bacteriophage Gp15 protein	NA
UHGV-1427891_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1427891_7	Structural annotation	PF06854	NA	NA
UHGV-1427891_8	PHROG	phrog_1061	NA	unknown function
UHGV-1427891_8	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-1427891_8	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1427891_8	Structural annotation	PF10666	NA	NA
UHGV-1427891_9	PHROG	phrog_820	major tail protein	tail
UHGV-1427891_9	UniRef90	UniRef90_A0A1X1KL86	Phage tail protein	NA
UHGV-1427891_9	eggNOG-mapper	1035189.HMPREF9954_0314	NA	NA
UHGV-1427891_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1427891_10	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1427891_10	UniRef90	UniRef90_A0A139RN84	Phage minor capsid protein	NA
UHGV-1427891_10	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1427891_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1427891_10	Structural annotation	PF12691	NA	NA
UHGV-1427891_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1427891_11	UniRef90	UniRef90_A0A1X1KL51	Capsid protein	NA
UHGV-1427891_11	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-1427891_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1427891_11	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1427891_12	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1427891_12	UniRef90	UniRef90_F9PZ39	Phage protein Gp9	NA
UHGV-1427891_12	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1427891_12	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1427891_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1427891_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1427891_13	UniRef90	UniRef90_A0A380KBA2	NA	NA
UHGV-1427891_13	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-1427891_15	PHROG	phrog_10018	NA	unknown function
UHGV-1427891_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-1427891_16	UniRef90	UniRef90_A0A1X1KL37	N4-gp56 family major capsid protein	NA
UHGV-1427891_16	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-1427891_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1427891_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1427891_17	UniRef90	UniRef90_A0A1F0C2D9	Scaffolding protein	NA
UHGV-1427891_17	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-1427891_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1427891_17	Structural annotation	PF06810	NA	NA
UHGV-1427891_18	PHROG	phrog_15041	NA	unknown function
UHGV-1427891_18	UniRef90	UniRef90_A0A150NRY7	Isoleucyl-tRNA synthetase	NA
UHGV-1427891_18	eggNOG-mapper	1095737.HMPREF1110_0926	NA	NA
UHGV-1427891_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1427891_19	UniRef90	UniRef90_A0A4U9Z0J8	Phage minor capsid 2 family protein	NA
UHGV-1427891_19	eggNOG-mapper	1035189.HMPREF9954_0304	Phage minor capsid protein 2	NA
UHGV-1427891_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1427891_19	COG	COG2369	NA	NA
UHGV-1427891_19	Structural annotation	PF06152, PF15529	NA	NA
UHGV-1427891_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-1427891_20	UniRef90	UniRef90_F9PZ31	Phage portal protein gp6-like protein	NA
UHGV-1427891_20	eggNOG-mapper	1035189.HMPREF9954_0303	portal protein	NA
UHGV-1427891_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1427891_20	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1427891_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1427891_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1427891_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1427891_21	UniRef90	UniRef90_G5KEP9	Phage terminase, large subunit, PBSX family	NA
UHGV-1427891_21	eggNOG-mapper	1035189.HMPREF9954_0302	Terminase-like family	NA
UHGV-1427891_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1427891_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1427891_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1427891_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1427891_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1427891_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1427891_22	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-1427891_22	UniRef90	UniRef90_UPI001C47DEB7	terminase small subunit	NA
UHGV-1427891_22	eggNOG-mapper	764291.STRUR_2109	NA	NA
UHGV-1427891_22	AcrCatalog	cluster_66354	NA	NA
UHGV-1427891_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1427891_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1427891_23	UniRef90	UniRef90_UPI000A107461	NA	NA
UHGV-1427891_23	eggNOG-mapper	1321372.AQQB01000060_gene55	NA	NA
UHGV-1427891_23	Pfam	PF07374	NA	DUF1492
UHGV-1427891_23	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA