UHGV-1427900

Genome information

vOTU vOTU-061909

Genome length 41,637 bps

CDS count 59

Completeness 99.54% (high-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-1427900
vOTU ID	vOTU-061909
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0277045
BioSample	SAMEA3182116
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.88
Jumbo phage	No

Genome content
Genome length	41,637 bps
GC content	56.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	95.08%
Average CDS length	674.03 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1427900_2	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-1427900_2	UniRef90	UniRef90_A0A7C1NSM7	NA	NA
UHGV-1427900_2	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-1427900_2	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-1427900_2	Structural annotation	PF07120, COG3756	NA	NA
UHGV-1427900_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1427900_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1427900_3	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-1427900_3	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-1427900_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1427900_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1427900_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1427900_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1427900_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1427900_6	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-1427900_6	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-1427900_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1427900_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1427900_7	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1427900_7	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1427900_7	Structural annotation	PF05772	NA	NA
UHGV-1427900_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1427900_8	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-1427900_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1427900_9	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1427900_9	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-1427900_9	eggNOG-mapper	445972.ANACOL_01823	NA	NA
UHGV-1427900_9	Pfam	PF06378	NA	DUF1071
UHGV-1427900_9	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-1427900_11	PHROG	phrog_4973	NA	unknown function
UHGV-1427900_11	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-1427900_11	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-1427900_11	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1427900_11	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1427900_12	eggNOG-mapper	1033743.CAES01000078_gene3736	Flagellar Assembly Protein A	NA
UHGV-1427900_12	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-1427900_16	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-1427900_16	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1427900_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1427900_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1427900_18	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-1427900_18	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-1427900_18	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1427900_18	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1427900_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1427900_18	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1427900_20	PHROG	phrog_38135	NA	unknown function
UHGV-1427900_20	eggNOG-mapper	1408303.JNJJ01000047_gene2868	NA	NA
UHGV-1427900_20	Pfam	PF14020	NA	DUF4236
UHGV-1427900_22	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1427900_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1427900_23	KOfam	K14059	int; integrase	NA
UHGV-1427900_23	PHROG	phrog_1	integrase	integration and excision
UHGV-1427900_23	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-1427900_23	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-1427900_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1427900_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1427900_23	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1427900_24	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1427900_25	Structural annotation	PF12510	NA	NA
UHGV-1427900_26	PHROG	phrog_20016	NA	unknown function
UHGV-1427900_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1427900_26	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1427900_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1427900_27	PHROG	phrog_16490	NA	unknown function
UHGV-1427900_27	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1427900_28	PHROG	phrog_22984	NA	unknown function
UHGV-1427900_29	PHROG	phrog_21718	NA	unknown function
UHGV-1427900_29	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1427900_30	PHROG	phrog_3754	NA	unknown function
UHGV-1427900_30	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1427900_31	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1427900_32	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1427900_32	PHROG	phrog_9611	endolysin	lysis
UHGV-1427900_32	UniRef90	UniRef90_A0A1V5KCB7	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1427900_32	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-1427900_32	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1427900_32	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1427900_32	Structural annotation	PF01510, PF14627, MF_04111, NF008758, COG5632	NA	NA
UHGV-1427900_33	PHROG	phrog_13256	NA	unknown function
UHGV-1427900_33	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-1427900_36	PHROG	phrog_27545	NA	unknown function
UHGV-1427900_36	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-1427900_36	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-1427900_36	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1427900_38	PHROG	phrog_29409	NA	unknown function
UHGV-1427900_38	UniRef90	UniRef90_A0A2V2GQ35	Isoaspartyl peptidase	NA
UHGV-1427900_39	PHROG	phrog_37900	NA	unknown function
UHGV-1427900_39	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-1427900_39	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-1427900_39	Pfam	PF19789	NA	DUF6273
UHGV-1427900_39	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1427900_39	Structural annotation	PF19789	NA	NA
UHGV-1427900_40	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1427900_40	PHROG	phrog_819	tail protein	tail
UHGV-1427900_40	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1427900_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1427900_40	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1427900_41	Structural annotation	PF18962, NF011773	NA	NA
UHGV-1427900_42	PHROG	phrog_33872	NA	unknown function
UHGV-1427900_42	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-1427900_43	PHROG	phrog_22978	NA	unknown function
UHGV-1427900_43	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-1427900_43	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1427900_43	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1427900_43	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1427900_44	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1427900_45	PHROG	phrog_12105	NA	unknown function
UHGV-1427900_45	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-1427900_46	PHROG	phrog_15239	NA	unknown function
UHGV-1427900_47	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1427900_47	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1427900_47	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1427900_47	Pfam	PF13252	NA	DUF4043
UHGV-1427900_47	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1427900_47	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1427900_48	PHROG	phrog_13908	NA	unknown function
UHGV-1427900_48	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1427900_49	PHROG	phrog_156	portal protein	head and packaging
UHGV-1427900_49	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1427900_49	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1427900_51	Structural annotation	PF21683	NA	NA
UHGV-1427900_52	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1427900_52	Structural annotation	PF00041, NF010681, COG3979	NA	NA
UHGV-1427900_53	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-1427900_54	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1427900_54	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-1427900_54	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1427900_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1427900_55	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1427900_55	UniRef90	UniRef90_A0A3D5TIM8	Terminase-like family protein	NA
UHGV-1427900_55	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1427900_55	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1427900_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-1427900_55	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1427900_56	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1427900_56	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-1427900_56	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1427900_56	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1427900_56	Structural annotation	PF16677	NA	NA
UHGV-1427900_58	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1427900_58	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-1427900_58	Structural annotation	PF21578, MF_00360	NA	NA