UHGV-1427906

Genome information

vOTU vOTU-061911

Genome length 41,643 bps

CDS count 55

Completeness 95.60% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-1427906
vOTU ID	vOTU-061911
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0277068
BioSample	SAMEA2784461
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.89
Jumbo phage	No

Genome content
Genome length	41,643 bps
GC content	62.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.38%
Average CDS length	717.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1427906_1	PHROG	phrog_22978	NA	unknown function
UHGV-1427906_1	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-1427906_2	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-1427906_3	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1427906_3	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-1427906_3	Structural annotation	PF11134, NF038015, TIGR03721, COG3823	NA	NA
UHGV-1427906_5	UniRef90	UniRef90_UPI00110693DB	gp58-like family protein	NA
UHGV-1427906_5	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-1427906_5	Structural annotation	PF07902, NF041249	NA	NA
UHGV-1427906_6	eggNOG-mapper	1007096.BAGW01000022_gene2650	NA	NA
UHGV-1427906_7	KOfam	K07273	acm; lysozyme	NA
UHGV-1427906_7	PHROG	phrog_291	endolysin	lysis
UHGV-1427906_7	UniRef90	UniRef90_A0A318EI28	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1427906_7	eggNOG-mapper	483218.BACPEC_02724	Hydrolase Family 25	NA
UHGV-1427906_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1427906_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1427906_8	eggNOG-mapper	1007096.BAGW01000017_gene815	NA	NA
UHGV-1427906_9	PHROG	phrog_9428	NA	unknown function
UHGV-1427906_9	UniRef90	UniRef90_UPI0019685E42	serine/threonine protein kinase	NA
UHGV-1427906_9	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-1427906_10	PHROG	phrog_30034	NA	unknown function
UHGV-1427906_10	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-1427906_10	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1427906_10	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1427906_11	PHROG	phrog_32779	NA	unknown function
UHGV-1427906_12	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-1427906_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1427906_13	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1427906_13	PHROG	phrog_819	tail protein	tail
UHGV-1427906_13	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-1427906_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1427906_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1427906_14	PHROG	phrog_12105	NA	unknown function
UHGV-1427906_14	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1427906_15	PHROG	phrog_371	major head protein	head and packaging
UHGV-1427906_15	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1427906_15	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1427906_15	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1427906_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1427906_16	PHROG	phrog_24113	NA	unknown function
UHGV-1427906_16	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1427906_16	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1427906_17	PHROG	phrog_35275	NA	unknown function
UHGV-1427906_17	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-1427906_19	PHROG	phrog_156	portal protein	head and packaging
UHGV-1427906_19	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1427906_19	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1427906_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1427906_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1427906_20	UniRef90	UniRef90_A0A1Y3SBH0	Terminase_3 domain-containing protein	NA
UHGV-1427906_20	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-1427906_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1427906_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1427906_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1427906_20	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1427906_21	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1427906_21	eggNOG-mapper	1519439.JPJG01000060_gene1884	DNA-packaging protein gp3	NA
UHGV-1427906_21	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1427906_21	Structural annotation	PF16677	NA	NA
UHGV-1427906_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1427906_22	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-1427906_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1427906_27	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-1427906_28	eggNOG-mapper	689781.AUJX01000009_gene401	NA	NA
UHGV-1427906_28	Structural annotation	PF13384, NF040595	NA	NA
UHGV-1427906_29	Structural annotation	PF10013	NA	NA
UHGV-1427906_32	PHROG	phrog_474	phosphofructokinase	other
UHGV-1427906_32	UniRef90	UniRef90_A0A316NLA2	NA	NA
UHGV-1427906_32	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-1427906_32	Pfam	PF19905	NA	DUF6378
UHGV-1427906_32	Structural annotation	PF19905	NA	NA
UHGV-1427906_34	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-1427906_37	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1427906_37	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1427906_37	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1427906_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1427906_38	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1427906_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1427906_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1427906_40	PHROG	phrog_3777	NA	unknown function
UHGV-1427906_40	Pfam	PF12957	NA	DUF3846
UHGV-1427906_40	Structural annotation	PF12957	NA	NA
UHGV-1427906_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1427906_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1427906_41	UniRef90	UniRef90_A0A1Y3RCT6	DNA helicase	NA
UHGV-1427906_41	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-1427906_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1427906_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1427906_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-1427906_41	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1427906_42	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1427906_42	eggNOG-mapper	1395516.PMO01_03040	Helix-turn-helix domain	NA
UHGV-1427906_42	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1427906_42	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-1427906_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1427906_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1427906_46	UniRef90	UniRef90_A0A3D5LEN7	XRE family transcriptional regulator	NA
UHGV-1427906_46	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-1427906_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1427906_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1427906_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1427906_47	eggNOG-mapper	748224.HMPREF9436_01806	Metallo-beta-lactamase domain protein	NA
UHGV-1427906_47	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-1427906_47	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1427906_49	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-1427906_51	KOfam	K14059	int; integrase	NA
UHGV-1427906_51	PHROG	phrog_1	integrase	integration and excision
UHGV-1427906_51	UniRef90	UniRef90_UPI0019585560	site-specific integrase	NA
UHGV-1427906_51	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1427906_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1427906_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1427906_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1427906_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1427906_55	PHROG	phrog_21376	NA	unknown function
UHGV-1427906_55	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-1427906_55	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-1427906_55	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal