UHGV-1428001

Genome information

Genome length 21,641 bps

CDS count 27

Completeness 65.30% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1428001
vOTU ID	vOTU-034880
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0158653
BioSample	SAMEA2738029
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.93
Jumbo phage	No

Genome content
Genome length	21,641 bps
GC content	40.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	89.98%
Average CDS length	724.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1428001_1	PHROG	phrog_1529	NA	unknown function
UHGV-1428001_1	UniRef90	UniRef90_A0A1X0WPY5	DNA-binding protein	NA
UHGV-1428001_1	eggNOG-mapper	888049.HMPREF8578_0245	NA	NA
UHGV-1428001_1	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-1428001_2	UniRef90	UniRef90_A0A8B4HWB8	Putative phage-associated protein	NA
UHGV-1428001_2	Structural annotation	PF13443, COG3655	NA	NA
UHGV-1428001_3	PHROG	phrog_27778	NA	unknown function
UHGV-1428001_4	PHROG	phrog_20440	NA	unknown function
UHGV-1428001_4	UniRef90	UniRef90_F5VXX3	Conserved domain protein	NA
UHGV-1428001_4	eggNOG-mapper	997830.HMPREF1124_0568	NA	NA
UHGV-1428001_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1428001_5	PHROG	phrog_1110	endolysin	lysis
UHGV-1428001_5	UniRef90	UniRef90_X8KD37	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1428001_5	eggNOG-mapper	936580.HMPREF1516_0702	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1428001_5	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1428001_5	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1428001_5	Structural annotation	PF19127, PF01510, TIGR04035, COG5263	NA	NA
UHGV-1428001_6	PHROG	phrog_297	holin	lysis
UHGV-1428001_6	UniRef90	UniRef90_E6KJ35	Holin, phage phi LC3 family	NA
UHGV-1428001_6	eggNOG-mapper	1282664.H354_07765	COG5546 Small integral membrane protein	NA
UHGV-1428001_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1428001_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1428001_6	COG	COG5546	NA	NA
UHGV-1428001_6	Structural annotation	COG5546	NA	NA
UHGV-1428001_7	PHROG	phrog_1296	holin	lysis
UHGV-1428001_7	UniRef90	UniRef90_A0A139NAW6	Phage holin	NA
UHGV-1428001_8	PHROG	phrog_1554	NA	unknown function
UHGV-1428001_8	UniRef90	UniRef90_A0A139Q9H9	NA	NA
UHGV-1428001_8	eggNOG-mapper	1035189.HMPREF9954_1920	NA	NA
UHGV-1428001_8	Structural annotation	PF07104	NA	NA
UHGV-1428001_9	PHROG	phrog_1137	NA	unknown function
UHGV-1428001_9	UniRef90	UniRef90_A0A1X0WPX7	Dihydrodipicolinate reductase	NA
UHGV-1428001_9	eggNOG-mapper	996306.SSUR61_0137	NA	NA
UHGV-1428001_10	PHROG	phrog_1210	PblB-type receptor binding	other
UHGV-1428001_10	UniRef90	UniRef90_A0A1X0WPV8	Peptidase S74 domain-containing protein	NA
UHGV-1428001_10	eggNOG-mapper	644007.C5J973_9CAUD	peptidoglycan catabolic process	NA
UHGV-1428001_10	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1428001_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1428001_10	Structural annotation	PF14594, PF00629, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-1428001_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1428001_11	UniRef90	UniRef90_A0A1F0TGE5	Phage tail protein	NA
UHGV-1428001_11	eggNOG-mapper	888049.HMPREF8578_0707	NA	NA
UHGV-1428001_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1428001_12	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1428001_12	UniRef90	UniRef90_X8K7L6	PhageMin_Tail domain-containing protein	NA
UHGV-1428001_12	eggNOG-mapper	644007.C5J971_9CAUD	peptidoglycan catabolic process	NA
UHGV-1428001_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1428001_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1428001_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1428001_13	PHROG	phrog_709	NA	unknown function
UHGV-1428001_13	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-1428001_13	eggNOG-mapper	644007.C5J970_9CAUD	NA	NA
UHGV-1428001_13	Structural annotation	PF11836	NA	NA
UHGV-1428001_14	PHROG	phrog_88	major tail protein	tail
UHGV-1428001_14	UniRef90	UniRef90_E6KKD9	Phage major tail protein, phi13 family	NA
UHGV-1428001_14	eggNOG-mapper	888049.HMPREF8578_0704	phage major tail protein, phi13 family	NA
UHGV-1428001_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1428001_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1428001_15	PHROG	phrog_78	tail terminator	connector
UHGV-1428001_15	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-1428001_15	eggNOG-mapper	644007.C5J968_9CAUD	aminopeptidase activity	NA
UHGV-1428001_15	Structural annotation	PF20765	NA	NA
UHGV-1428001_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1428001_16	UniRef90	UniRef90_A0A098ANM6	Bacteriophage pi2 protein 37	NA
UHGV-1428001_16	eggNOG-mapper	644007.C5J967_9CAUD	exonuclease activity	NA
UHGV-1428001_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1428001_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1428001_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1428001_17	UniRef90	UniRef90_UPI000B58A5F0	phage head closure protein	NA
UHGV-1428001_17	eggNOG-mapper	644007.C5J966_9CAUD	NA	NA
UHGV-1428001_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1428001_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1428001_18	PHROG	phrog_2550	NA	unknown function
UHGV-1428001_18	UniRef90	UniRef90_A0A081R3E6	Prophage pi2 protein 35	NA
UHGV-1428001_18	eggNOG-mapper	888049.HMPREF8578_0700	NA	NA
UHGV-1428001_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1428001_19	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-1428001_19	UniRef90	UniRef90_A0A0P0N6K2	Phage transcriptional terminator	NA
UHGV-1428001_19	eggNOG-mapper	1405498.SSIM_04855	Rho termination factor, N-terminal domain	NA
UHGV-1428001_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1428001_20	UniRef90	UniRef90_E6KKD3	Phage major capsid protein, HK97 family	NA
UHGV-1428001_20	eggNOG-mapper	888049.HMPREF8578_0698	capsid protein	NA
UHGV-1428001_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1428001_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1428001_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1428001_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1428001_21	KOfam	K06904	NA	NA
UHGV-1428001_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1428001_21	UniRef90	UniRef90_E6KKD2	Phage prohead protease, HK97 family	NA
UHGV-1428001_21	eggNOG-mapper	888049.HMPREF8578_0697	Caudovirus prohead serine protease	NA
UHGV-1428001_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1428001_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1428001_21	COG	COG3740	Phage head maturation protease	NA
UHGV-1428001_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1428001_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-1428001_22	UniRef90	UniRef90_UPI001CBC02E6	phage portal protein	NA
UHGV-1428001_22	eggNOG-mapper	888049.HMPREF8578_0696	Phage portal protein	NA
UHGV-1428001_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1428001_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1428001_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1428001_22	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1428001_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1428001_23	UniRef90	UniRef90_A0A7G1IQ86	Terminase	NA
UHGV-1428001_23	eggNOG-mapper	888049.HMPREF8578_0694	Terminase	NA
UHGV-1428001_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1428001_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1428001_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1428001_23	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1428001_24	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1428001_24	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-1428001_24	eggNOG-mapper	1005705.HMPREF9967_1038	Phage terminase, small subunit	NA
UHGV-1428001_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1428001_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1428001_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1428001_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1428001_25	UniRef90	UniRef90_A0A081R3F3	Prophage LambdaBa02, HNH endonuclease family protein	NA
UHGV-1428001_25	eggNOG-mapper	644007.C5J957_9CAUD	endonuclease activity	NA
UHGV-1428001_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1428001_26	PHROG	phrog_216	integrase	integration and excision
UHGV-1428001_26	UniRef90	UniRef90_A0A4D6B299	Site-specific recombinase	NA
UHGV-1428001_26	eggNOG-mapper	644007.C5J955_9CAUD	Phage integrase family	NA
UHGV-1428001_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1428001_26	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1428001_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1428001_27	UniRef90	UniRef90_E6KKC4	Phage transcriptional regulator, RinA family	NA
UHGV-1428001_27	eggNOG-mapper	1123315.AUIP01000003_gene229	Transcriptional regulator, RinA family	NA
UHGV-1428001_27	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1428001_27	Structural annotation	PF05263, TIGR01636	NA	NA