UHGV-1428211

Genome information

Genome length 33,149 bps

CDS count 51

Completeness 98.28% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1428211
vOTU ID	vOTU-075701
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229118
BioSample	SAMEA2738053
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.14
Jumbo phage	No

Genome content
Genome length	33,149 bps
GC content	41.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.50%
Average CDS length	616.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1428211_2	eggNOG-mapper	1121947.AUHK01000002_gene953	NA	NA
UHGV-1428211_3	PHROG	phrog_1281	NA	unknown function
UHGV-1428211_3	UniRef90	UniRef90_UPI000417BFB7	NA	NA
UHGV-1428211_3	eggNOG-mapper	1121947.AUHK01000002_gene952	NA	NA
UHGV-1428211_3	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1428211_3	COG	COG3600	NA	NA
UHGV-1428211_3	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1428211_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1428211_4	PHROG	phrog_4018	amidase	lysis
UHGV-1428211_4	UniRef90	UniRef90_A0A1I1Y3B9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1428211_4	eggNOG-mapper	888727.HMPREF9092_0301	repeat protein	NA
UHGV-1428211_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1428211_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1428211_4	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1428211_4	Structural annotation	MF_04111, NF008758, COG5632	NA	NA
UHGV-1428211_5	PHROG	phrog_881	holin	lysis
UHGV-1428211_5	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-1428211_5	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1428211_5	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1428211_5	Structural annotation	PF16938	NA	NA
UHGV-1428211_6	PHROG	phrog_4105	NA	unknown function
UHGV-1428211_6	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1428211_6	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-1428211_7	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1428211_7	Structural annotation	PF11314, PF14600, PF02839	NA	NA
UHGV-1428211_8	PHROG	phrog_372	tail protein	tail
UHGV-1428211_8	UniRef90	UniRef90_UPI001EE154D9	NA	NA
UHGV-1428211_8	eggNOG-mapper	658659.HMPREF0983_03294	NA	NA
UHGV-1428211_8	Pfam	PF05895	NA	DUF859
UHGV-1428211_8	COG	COG4675	Phage tail collar domain	NA
UHGV-1428211_8	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1428211_9	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-1428211_9	UniRef90	UniRef90_UPI0018E9B800	collagen-like protein	NA
UHGV-1428211_9	eggNOG-mapper	1282664.H354_06721	outer membrane autotransporter barrel domain protein	NA
UHGV-1428211_9	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1428211_10	PHROG	phrog_1194	NA	unknown function
UHGV-1428211_10	eggNOG-mapper	1282664.H354_06716	NA	NA
UHGV-1428211_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1428211_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1428211_11	UniRef90	UniRef90_A0A139R8H3	Phage tail length tape-measure protein	NA
UHGV-1428211_11	eggNOG-mapper	1282664.H354_06711	Phage-related minor tail protein	NA
UHGV-1428211_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1428211_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1428211_12	PHROG	phrog_8355	NA	unknown function
UHGV-1428211_12	UniRef90	UniRef90_UPI001924D062	Gp15 family bacteriophage protein	NA
UHGV-1428211_12	eggNOG-mapper	1282664.H354_06706	NA	NA
UHGV-1428211_13	PHROG	phrog_8300	NA	unknown function
UHGV-1428211_13	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-1428211_13	Structural annotation	PF06854	NA	NA
UHGV-1428211_15	PHROG	phrog_820	major tail protein	tail
UHGV-1428211_15	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-1428211_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1428211_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1428211_16	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-1428211_16	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-1428211_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1428211_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1428211_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1428211_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1428211_18	PHROG	phrog_8710	NA	unknown function
UHGV-1428211_18	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-1428211_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1428211_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1428211_19	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-1428211_20	PHROG	phrog_1378	NA	unknown function
UHGV-1428211_20	eggNOG-mapper	1391647.AVSV01000003_gene1809	NA	NA
UHGV-1428211_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-1428211_21	UniRef90	UniRef90_B8I124	Putative phage major capsid protein	NA
UHGV-1428211_21	eggNOG-mapper	394503.Ccel_3291	NA	NA
UHGV-1428211_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1428211_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1428211_22	eggNOG-mapper	1282664.H354_06656	NA	NA
UHGV-1428211_23	PHROG	phrog_918	NA	unknown function
UHGV-1428211_23	UniRef90	UniRef90_UPI001C1095C9	NA	NA
UHGV-1428211_23	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-1428211_23	Pfam	PF19791	NA	DUF6275
UHGV-1428211_23	Structural annotation	PF19791	NA	NA
UHGV-1428211_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1428211_24	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-1428211_24	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-1428211_24	Pfam	PF14359	NA	DUF4406
UHGV-1428211_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1428211_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1428211_26	UniRef90	UniRef90_A0A413WRQ0	Minor capsid protein	NA
UHGV-1428211_26	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-1428211_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1428211_26	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-1428211_27	PHROG	phrog_25639	NA	unknown function
UHGV-1428211_27	eggNOG-mapper	1282664.H354_06631	NA	NA
UHGV-1428211_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-1428211_28	UniRef90	UniRef90_A0A6I3IQZ0	Phage portal protein	NA
UHGV-1428211_28	eggNOG-mapper	1282664.H354_06626	NA	NA
UHGV-1428211_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1428211_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1428211_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1428211_29	UniRef90	UniRef90_A0A1C6JYP3	Phage terminase, large subunit, PBSX family	NA
UHGV-1428211_29	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-1428211_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-1428211_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1428211_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1428211_30	UniRef90	UniRef90_A0A6N9QIP1	Helix-turn-helix domain-containing protein	NA
UHGV-1428211_30	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-1428211_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1428211_30	Structural annotation	PF07141	NA	NA
UHGV-1428211_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1428211_31	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1428211_31	UniRef90	UniRef90_M3H1L0	Phage DNA methylase	NA
UHGV-1428211_31	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1428211_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1428211_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1428211_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1428211_31	COG	COG0863	DNA modification methylase	NA
UHGV-1428211_31	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1428211_32	PHROG	phrog_11237	NA	unknown function
UHGV-1428211_32	eggNOG-mapper	875454.BAEW01000017_gene1604	NA	NA
UHGV-1428211_32	Structural annotation	TIGR01636	NA	NA
UHGV-1428211_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1428211_33	eggNOG-mapper	936375.HMPREF1152_0670	NA	NA
UHGV-1428211_33	Structural annotation	PF21578	NA	NA
UHGV-1428211_34	PHROG	phrog_25385	NA	unknown function
UHGV-1428211_34	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-1428211_35	PHROG	phrog_5781	NA	unknown function
UHGV-1428211_35	UniRef90	UniRef90_UPI001A9A7458	NA	NA
UHGV-1428211_35	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-1428211_35	Pfam	PF14359	NA	DUF4406
UHGV-1428211_35	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1428211_36	PHROG	phrog_3782	NA	unknown function
UHGV-1428211_36	UniRef90	UniRef90_UPI000F8E767E	YopX family protein	NA
UHGV-1428211_36	eggNOG-mapper	476272.RUMHYD_01460	NA	NA
UHGV-1428211_36	Pfam	PF09643	YopX protein	YopX
UHGV-1428211_36	Pfam	PF14192	NA	DUF4314
UHGV-1428211_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1428211_36	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-1428211_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1428211_38	PHROG	phrog_8411	NA	unknown function
UHGV-1428211_38	UniRef90	UniRef90_A7AY34	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1428211_38	eggNOG-mapper	411470.RUMGNA_00199	C-5 cytosine-specific DNA methylase	NA
UHGV-1428211_38	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-1428211_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1428211_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1428211_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1428211_39	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1428211_39	UniRef90	UniRef90_A0A1C6E221	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1428211_39	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-1428211_39	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-1428211_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1428211_39	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1428211_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1428211_39	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1428211_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1428211_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1428211_41	UniRef90	UniRef90_X8K236	Single-stranded DNA-binding protein	NA
UHGV-1428211_41	eggNOG-mapper	883109.HMPREF0380_00268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1428211_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1428211_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1428211_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1428211_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1428211_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1428211_43	PHROG	phrog_7566	NA	unknown function
UHGV-1428211_46	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1428211_46	PHROG	phrog_19890	NA	unknown function
UHGV-1428211_46	UniRef90	UniRef90_A0A4Q7PUD7	Transglycosylase-like protein with SLT domain	NA
UHGV-1428211_46	eggNOG-mapper	411468.CLOSCI_01470	Transglycosylase SLT domain	NA
UHGV-1428211_46	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1428211_46	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1428211_46	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-1428211_47	Structural annotation	PF11972, COG3311	NA	NA
UHGV-1428211_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1428211_48	UniRef90	UniRef90_A0A847CLB9	Helix-turn-helix transcriptional regulator	NA
UHGV-1428211_48	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-1428211_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1428211_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1428211_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1428211_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1428211_49	UniRef90	UniRef90_A0A095YT12	HTH cro/C1-type domain-containing protein	NA
UHGV-1428211_49	eggNOG-mapper	562981.HMPREF0428_00186	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1428211_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1428211_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1428211_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1428211_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1428211_49	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1428211_50	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-1428211_50	PHROG	phrog_17239	NA	unknown function
UHGV-1428211_50	UniRef90	UniRef90_A0A7X7LKN5	Type I restriction enzyme HsdR N-terminal domain-containing protein	NA
UHGV-1428211_50	eggNOG-mapper	204773.HEAR2264	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-1428211_50	Pfam	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N_2
UHGV-1428211_50	COG	COG2810	Predicted type IV restriction endonuclease	NA
UHGV-1428211_50	Structural annotation	PF13588, NF007086, COG4748	NA	NA
UHGV-1428211_51	KOfam	K14059	int; integrase	NA
UHGV-1428211_51	PHROG	phrog_1	integrase	integration and excision
UHGV-1428211_51	UniRef90	UniRef90_A0A095ZM98	Tyr recombinase domain-containing protein	NA
UHGV-1428211_51	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-1428211_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1428211_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1428211_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1428211_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA