UHGV-1428564

Genome information

Genome length 34,108 bps

CDS count 56

Completeness 92.67% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-1428564
vOTU ID	vOTU-013018
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0234022
BioSample	SAMN03283276
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.36
Jumbo phage	No

Genome content
Genome length	34,108 bps
GC content	61.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.80%
Average CDS length	569.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1428564_1	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-1428564_1	UniRef90	UniRef90_A0A558ZQL9	Terminase large subunit (Fragment)	NA
UHGV-1428564_1	eggNOG-mapper	755731.Clo1100_0544	Phage Terminase	NA
UHGV-1428564_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1428564_1	Structural annotation	PF20441, COG5362	NA	NA
UHGV-1428564_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-1428564_2	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-1428564_2	eggNOG-mapper	491915.Aflv_0662	Phage portal protein	NA
UHGV-1428564_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1428564_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1428564_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1428564_2	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1428564_3	KOfam	K06904	NA	NA
UHGV-1428564_3	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1428564_3	UniRef90	UniRef90_A0A373ZF38	HK97 family phage prohead protease	NA
UHGV-1428564_3	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-1428564_3	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1428564_3	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1428564_3	COG	COG3740	Phage head maturation protease	NA
UHGV-1428564_3	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1428564_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-1428564_4	UniRef90	UniRef90_A0A1H4BNJ7	Phage major capsid protein, HK97 family	NA
UHGV-1428564_4	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1428564_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1428564_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1428564_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1428564_5	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1428564_6	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1428564_6	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-1428564_6	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1428564_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1428564_7	UniRef90	UniRef90_A0A7C6PS93	HK97 gp10 family phage protein	NA
UHGV-1428564_7	eggNOG-mapper	1123298.KB904077_gene463	NA	NA
UHGV-1428564_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1428564_8	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-1428564_8	Structural annotation	PF20765	NA	NA
UHGV-1428564_9	PHROG	phrog_88	major tail protein	tail
UHGV-1428564_9	UniRef90	UniRef90_D1PND6	Phage major tail protein, phi13 family	NA
UHGV-1428564_9	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-1428564_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1428564_9	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1428564_10	PHROG	phrog_709	NA	unknown function
UHGV-1428564_10	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-1428564_10	Structural annotation	PF11836	NA	NA
UHGV-1428564_11	PHROG	phrog_3033	NA	unknown function
UHGV-1428564_11	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-1428564_12	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-1428564_12	UniRef90	UniRef90_UPI000C7A2D83	phage tail tape measure protein	NA
UHGV-1428564_12	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-1428564_12	Pfam	PF05017	TMP repeat	TMP
UHGV-1428564_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1428564_12	Structural annotation	COG5280	NA	NA
UHGV-1428564_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1428564_13	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-1428564_13	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-1428564_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1428564_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1428564_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1428564_14	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-1428564_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1428564_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1428564_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1428564_14	COG	COG4926	Phage-related protein	NA
UHGV-1428564_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1428564_15	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-1428564_15	Structural annotation	PF20377	NA	NA
UHGV-1428564_16	UniRef90	UniRef90_E0S2M2	Peptidase_C39_2 domain-containing protein	NA
UHGV-1428564_16	eggNOG-mapper	515622.bpr_I1251	Peptidase_C39 like family	NA
UHGV-1428564_16	Structural annotation	PF05543, NF033920	NA	NA
UHGV-1428564_17	Structural annotation	PF21683	NA	NA
UHGV-1428564_18	eggNOG-mapper	1232428.CAVO010000002_gene2344	NA	NA
UHGV-1428564_18	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-1428564_20	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1428564_20	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1428564_22	Structural annotation	PF21722	NA	NA
UHGV-1428564_24	PHROG	phrog_18593	NA	unknown function
UHGV-1428564_24	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-1428564_24	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-1428564_24	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1428564_24	Structural annotation	PF14600	NA	NA
UHGV-1428564_25	PHROG	phrog_4105	NA	unknown function
UHGV-1428564_25	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1428564_25	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-1428564_26	PHROG	phrog_881	holin	lysis
UHGV-1428564_26	UniRef90	UniRef90_A0A843HKU1	Phage holin	NA
UHGV-1428564_26	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-1428564_26	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1428564_26	Structural annotation	PF16938, COG3237	NA	NA
UHGV-1428564_27	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1428564_27	PHROG	phrog_435	endolysin	lysis
UHGV-1428564_27	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-1428564_27	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1428564_27	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1428564_27	Pfam	PF05036	SPOR domain	SPOR
UHGV-1428564_27	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1428564_27	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1428564_28	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-1428564_30	PHROG	phrog_22984	NA	unknown function
UHGV-1428564_31	PHROG	phrog_16490	NA	unknown function
UHGV-1428564_31	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1428564_32	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1428564_33	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-1428564_34	KOfam	K14059	int; integrase	NA
UHGV-1428564_34	PHROG	phrog_1	integrase	integration and excision
UHGV-1428564_34	UniRef90	UniRef90_U2QJL8	Site-specific recombinase, phage integrase family	NA
UHGV-1428564_34	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-1428564_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1428564_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1428564_34	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1428564_35	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-1428564_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1428564_35	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-1428564_36	PHROG	phrog_17982	NA	unknown function
UHGV-1428564_36	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-1428564_36	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-1428564_36	Pfam	PF14020	NA	DUF4236
UHGV-1428564_36	Structural annotation	PF14020, PF21602	NA	NA
UHGV-1428564_37	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-1428564_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1428564_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1428564_37	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1428564_38	UniRef90	UniRef90_A0A1V0QCA0	Helix-turn-helix transcriptional regulator	NA
UHGV-1428564_38	eggNOG-mapper	1226322.HMPREF1545_02466	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1428564_38	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1428564_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1428564_39	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1428564_39	UniRef90	UniRef90_UPI0005E56401	helix-turn-helix domain-containing protein	NA
UHGV-1428564_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1428564_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1428564_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1428564_40	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1428564_40	UniRef90	UniRef90_A0A1Y3RCD0	DNA-binding protein	NA
UHGV-1428564_40	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-1428564_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1428564_40	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1428564_40	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-1428564_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1428564_41	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-1428564_42	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1428564_42	UniRef90	UniRef90_UPI000F7B2FCE	helix-turn-helix domain-containing protein	NA
UHGV-1428564_42	eggNOG-mapper	1506583.JQJY01000003_gene3415	Helix-turn-helix domain	NA
UHGV-1428564_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1428564_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1428564_44	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1428564_44	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1428564_44	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-1428564_44	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-1428564_44	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1428564_44	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1428564_44	COG	COG0305	Replicative DNA helicase	NA
UHGV-1428564_44	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-1428564_45	Structural annotation	COG2139	NA	NA
UHGV-1428564_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1428564_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1428564_46	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-1428564_46	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1428564_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-1428564_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1428564_46	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1428564_48	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-1428564_49	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1428564_49	PHROG	phrog_27290	NA	unknown function
UHGV-1428564_49	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-1428564_49	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-1428564_49	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1428564_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1428564_49	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1428564_51	Structural annotation	NF007271	NA	NA
UHGV-1428564_52	PHROG	phrog_924	NA	unknown function
UHGV-1428564_52	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-1428564_52	Pfam	PF04448	NA	DUF551
UHGV-1428564_55	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1428564_55	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-1428564_55	Structural annotation	PF11726	NA	NA
UHGV-1428564_56	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1428564_56	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-1428564_56	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-1428564_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1428564_56	Structural annotation	TIGR02646	NA	NA