UHGV-1428577

Genome information

Genome length 22,999 bps

CDS count 25

Completeness 50.91% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1428577
vOTU ID	vOTU-025180
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0168591
BioSample	SAMEA4545532
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.67
Jumbo phage	No

Genome content
Genome length	22,999 bps
GC content	29.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	94.54%
Average CDS length	870.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1428577_1	UniRef90	UniRef90_UPI00111833E3	HEAT repeat domain-containing protein	NA
UHGV-1428577_1	eggNOG-mapper	861454.HMPREF9099_02780	lyase activity	NA
UHGV-1428577_1	COG	COG1413	HEAT repeat	NA
UHGV-1428577_2	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1428577_2	UniRef90	UniRef90_UPI0018AB1359	phage terminase small subunit	NA
UHGV-1428577_2	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-1428577_2	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1428577_2	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1428577_2	COG	COG5484	NA	NA
UHGV-1428577_2	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-1428577_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1428577_3	PHROG	phrog_10250	NA	unknown function
UHGV-1428577_3	UniRef90	UniRef90_A0A1C6CH21	Phage terminase, large subunit, PBSX family	NA
UHGV-1428577_3	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-1428577_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1428577_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1428577_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-1428577_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1428577_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-1428577_4	UniRef90	UniRef90_UPI0018AC70F4	phage portal protein	NA
UHGV-1428577_4	eggNOG-mapper	536233.CLO_1835	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1428577_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1428577_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1428577_5	PHROG	phrog_918	NA	unknown function
UHGV-1428577_5	UniRef90	UniRef90_UPI0008D94115	NA	NA
UHGV-1428577_5	eggNOG-mapper	888055.HMPREF9015_01979	NA	NA
UHGV-1428577_5	Pfam	PF19791	NA	DUF6275
UHGV-1428577_5	Structural annotation	PF19791	NA	NA
UHGV-1428577_6	PHROG	phrog_21401	pilot protein for DNA ejection	tail
UHGV-1428577_6	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-1428577_6	eggNOG-mapper	1121342.AUCO01000012_gene1699	NA	NA
UHGV-1428577_6	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1428577_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1428577_7	UniRef90	UniRef90_UPI0018AB6737	phage scaffolding protein	NA
UHGV-1428577_7	eggNOG-mapper	1582149.A0A0A8WEG1_9CAUD	Phage minor structural protein GP20	NA
UHGV-1428577_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1428577_7	Structural annotation	PF06810	NA	NA
UHGV-1428577_8	PHROG	phrog_909	major head protein	head and packaging
UHGV-1428577_8	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-1428577_8	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-1428577_9	PHROG	phrog_29	major head protein	head and packaging
UHGV-1428577_9	UniRef90	UniRef90_A0A1G9TZ64	Phage major capsid protein E	NA
UHGV-1428577_9	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-1428577_9	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1428577_9	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1428577_10	PHROG	phrog_4020	NA	unknown function
UHGV-1428577_10	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-1428577_11	PHROG	phrog_8435	NA	unknown function
UHGV-1428577_11	UniRef90	UniRef90_W6N5C6	Conserved protein	NA
UHGV-1428577_11	eggNOG-mapper	748727.CLJU_c31280	NA	NA
UHGV-1428577_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1428577_12	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-1428577_12	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1428577_13	PHROG	phrog_7585	NA	unknown function
UHGV-1428577_13	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-1428577_13	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1428577_14	PHROG	phrog_6686	tail tube protein	tail
UHGV-1428577_14	UniRef90	UniRef90_UPI001CF4E607	Ig-like domain-containing protein	NA
UHGV-1428577_14	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-1428577_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1428577_15	PHROG	phrog_6280	NA	unknown function
UHGV-1428577_15	UniRef90	UniRef90_UPI001C800AF1	esterase	NA
UHGV-1428577_15	eggNOG-mapper	536233.CLO_0548	NA	NA
UHGV-1428577_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1428577_16	UniRef90	UniRef90_UPI000F057568	phage tail tape measure protein	NA
UHGV-1428577_16	eggNOG-mapper	536233.CLO_0550	phage tail tape measure protein	NA
UHGV-1428577_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1428577_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1428577_16	COG	COG5283	Phage-related tail protein	NA
UHGV-1428577_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1428577_17	PHROG	phrog_36410	NA	unknown function
UHGV-1428577_17	UniRef90	UniRef90_UPI0008D9412B	phage tail family protein	NA
UHGV-1428577_17	eggNOG-mapper	431943.CKL_4056	Phage tail protein	NA
UHGV-1428577_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1428577_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-1428577_17	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1428577_18	PHROG	phrog_538	minor tail protein	tail
UHGV-1428577_18	UniRef90	UniRef90_UPI0018AAAF34	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1428577_18	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1428577_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1428577_18	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1428577_19	PHROG	phrog_1220	head protein	head and packaging
UHGV-1428577_19	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-1428577_19	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-1428577_19	Structural annotation	PF20747	NA	NA
UHGV-1428577_21	PHROG	phrog_3321	rhodanese-related sulfurtransferase	other
UHGV-1428577_21	UniRef90	UniRef90_A0A3M8C9A4	NA	NA
UHGV-1428577_21	eggNOG-mapper	1296662.S5MCG6_9CAUD	transferase activity	NA
UHGV-1428577_22	PHROG	phrog_6782	tail fiber protein	tail
UHGV-1428577_22	eggNOG-mapper	1391647.AVSV01000022_gene2575	NA	NA
UHGV-1428577_22	Structural annotation	PF10651	NA	NA
UHGV-1428577_23	PHROG	phrog_9829	NA	unknown function
UHGV-1428577_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1428577_24	PHROG	phrog_3088	amidase	lysis
UHGV-1428577_24	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-1428577_24	eggNOG-mapper	1449126.JQKL01000046_gene2088	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1428577_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1428577_24	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1428577_24	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1428577_24	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA